ISMB/ECCB 2025: Liverpool, LLMs and Lessons in Open Science The Open Bioinformatics Foundation (OBF) Event Fellowship program aims to promote diverse participation at events promoting open-source bioinformatics software development and open science practices in the biological research community.
Biobank-scale relatedness estimation, SNP calling and phasing with long RNA-seq reads, predicting expression-altering promoter mutations with DL, cross-species filtering for comparative genomics, ...
RAND corp AIxBio report, AI accelerating: GPT-4b for stem cell reprogramming; AI is slowing down; UVA SDS on Bluesky; LLMs and education; Python needs R's CRAN;
Developing an R package using the OpenAI Codex agent in Positron
Using R and the GitHub API to get licensing information for GitHub repos for sequencing-related companies, one-shot with GPT-5.
The Open Bioinformatics Foundation (OBF) Event Fellowship program aims to promote diverse participation at events promoting open-source bioinformatics software development and open science practices in the biological research community.
Best AI for R, the weight of a cell, R+MCP, AI is a mass delusion event, AI hiring freezes, Quarto+Positron, biology moonshots, Julia for R users, AI hallucination, nf-core advisories...
Genome annotation, viral genome clustering, metagenomic diagnostics, SV analysis on ONT reads, functional prediction, gene loss, DNA damage/repair, CRISPR metagenomics, LLM lit review, ...
ChatGPT can be (mis)used to conduct scientific peer review with a predetermined outcome.
Two almost complete and gapless genomes of the sex-changing central bearded dragon (Pogona vitticeps) are published today in GigaScience to help tackle the mystery of reptile sex determination. Read more here.
Closing my browser tabs: papers, blogs, news stories, YouTube videos, tutorials, etc.