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Getting Things Done in Genetics & Bioinformatics Research
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Author Stephen Turner

The estout package for Stata is useful for quickly creating nicely formatted tables from a regression analysis for tables or papers. To install it, fire up Stata and type in this command:ssc install estout, replaceStata will automatically download and install the package. Run the regression as you normally would, then use the esttab command (part of the estout package) to create a table using those results.

Published
Author Stephen Turner

Google's chief economist was recently quoted as saying "The sexy job in the next ten years will be statisticians… The ability to take data-to be able to understand it, to process it, to extract value from it, to visualize it, to communicate it-that’s going to be a hugely important skill." I'll leave you for the weekend with this ego-boosting article relating how our skill set as statisticians is a hot commodity in the real world.Dataspora Blog:

Published
Author Stephen Turner

If you're doing an analysis with variables that naturally vary on a continuous scale, like age or smoking pack-years, NEVER be tempted to categorize individuals into groups - there's nearly always a better approach that utilizes the full distribution of values. It may seem convenient for a particular analysis you're doing but you'll take an enormous hit in power and precision.

Published
Author Stephen Turner

What's your power to detect a recessive effect with an odds ratio of 1.2 for a disease with 4.2% prevalence using 1200 cases and 2900 controls? What if the allele is rare? Is it worth it, in terms of power gain, to genotype 1000 more individuals? How small of an effect can you detect with 80% power using the data you have? These questions and others can be answered by power and sample size calculations.