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Dr. Joaquin Barroso's Blog

Scientific log of a computational chemist - "Make like a molecule and React!"
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As a scientist I believe the free share of information (which is not the same as to say of property) should prevail throughout the vastness of this global tool we have available. I’ve worked for private companies and I do believe in their right to keeping private the information they have invested in. But with SOPA there is an issue with freedom of speech and nobody wants to have their accounts monitored by a government, any government.

Computational ChemistrySoftwareVisualizationDownloadDownload MolekelChemical Sciences
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Due to extensive popular demand, I hereby make available the necessary files to run Molekel in its old 4.3 version . The program has been compiled to work under Windows 32 bit architecture. Just extract it and place the main folder (as provided here) in any location and run the .exe file located inside. You can generate a direct access to it from your desktop and it even includes a small icon to be used for this purpose.

Computational ChemistryGaussianModelsSoftwareTheoretical ChemistryChemical Sciences
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I am frequently asked how to include an extra set of basis functions in a calculation or how to use an entirely external basis set. Sometimes this question also implies the explicit declaration of an external pseudopotential or Effective Core Potential (ECP). New basis sets and ECPs are published continuously in specialized journals all the time. The same happens with functionals for DFT calculations.

Computational ChemistryGaussianModelsSoftwareTheoretical ChemistryChemical Sciences
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One of the most successful posts this blog has ever published was on certain nuances of the solvation calculations on PCM in G03. However there are some differences in the SCRF modules between G09 and G03 and I here present some of them as well as some tips to work with the new version. The SCFVAC keyword used to calculate the Gibbs Solvation Energy change is no longer available.

ChemistryGreen ChemistryIYC 2011SustainabilityScienceChemical Sciences
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As I recently pointed out in an interview for a webinar titled The Future We Create, (sponsored by the Dow Chemical Co.) I believe we must clearly differentiate the concepts of Green Chemistry and Sustainable chemistry or we take the risk of confusing purpose and procedure; instead, having them both clearly defined we can use […]

ChemistryInternetPhilosophySustainabilityTalksChemical Sciences
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The Future of Sustainable Chemistry As part of the ongoing events of the International Year of Chemistry, I was interviewed last month for a webinar titled “The Future of Sustainable Chemistry” which in turn is part of a broader series of webinars called “The Future We Create“. These events are sponsored mainly by the DOW […]

ChemistryInternetIYC 2011SustainabilityTalksChemical Sciences
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I was recently invited to participate in a series called The Future We Create . This event is the third installment in an ongoing conversation (sponsored by Dow Chemical) to explore how chemistry can collaborate with other sectors and concerned citizens to solve humanity’s most important challenges. The title of this installment is The Future of Sustainable Chemistry which will be aired next Tuesday! An official invitation follows.

BloggingInternetResearchChemical Sciences
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A new look was needed in this site! and some more changes will be made in the next few days. A new page was added with the topics of the courses I’ve taught here at UAEMex, namely QSAR and Molecular Modeling. Another page was added for you all to leave questions which are hard to fit into other places of this blog.