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Dr. Joaquin Barroso's Blog

Scientific log of a computational chemist - "Make like a molecule and React!"
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Random ThoughtsCareerCareer AdviceScienceScientific Career AdviceChemical Sciences
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I usually read the whole info on the Statistics page that WordPress provides to this blog in order to know how many visitors drop by during the week; what other sites are sending me some traffic, if any, or what searches are readers performing which leads them to my blog. Last week I found this post title as one of the Google searches that ultimately made someone find my blog.

MathematicsQSARTalksTeachingCCIQSChemical Sciences
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Teaching has never been my cup of  tea. Karl Friederich Gauss said “Good students do not need a teacher and bad students, well, why do they want one?” I once read this quote somewhere, and although I don’t know if he actually said it or not, there is some truth to it. It is known that Gauss didn’t like teaching, still spent most of his life doing it. Anyway, teaching is important and it has to be done!

Computational ChemistryGaussianSoftwareTricksChemical Sciences
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This post will become updated continuously in order to include as much of these useful tips as I find along the way, so if you are interested please subscribe so you don’t have to visit often. Some are old or even a bit obsolete in terms of software versions but I still include them so they can all be gathered in one place;

Computational ChemistryInternetChemical Sciences
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I just recently found out this very blog of mine was found and ranked by the Chemical blogspace as number 96 (out of about 250, before you ask). I still don’t know how do they do the math but it seems it has to do with the number of clicks a blog gets over a certain period of time and relating that somehow to the number of new posts over that same period.

Computational ChemistryTheoretical ChemistryWhite PapersFukuiOrbital PopulaionChemical Sciences
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It seems a bit weird that there isn’t much information on this topic on the internet. Recently I’ve had to calculate some of these indices to explain an anomalous behaviour in lactones formation and out of curiosity I ran a small search on the net about how to calculate them.

Computational ChemistryGaussianModelsWhite PapersChemical Sciences
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It’s always hard to write about a computational method in a blog post since it could span for pages on end, so that’s why this post as the ones about NBO and PCM will only treat briefly the underlying physics (at a handwave level) and interpretation about the most popular choices within multiconfigurational methods which form part of the family of post Hartree-Fock methods*. If you are only interested in one of the many MC methods scroll down

Random ThoughtsCCIQSChemical Sciences
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After months of waiting I am now oficially hired as an associate researcher at the Chemistry Institute from the National Autonomous University of Mexico! Actually I will form part of the new Joint Center for Research in Sustainable Chemistry located outside the city of Toluca in Mexico. This new job comes as a great career opportunity in which long term perspectives are high.

Computational ChemistryGaussianWhite PapersChemical Sciences
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Another common question on CCL… The use of Internal Redundant coordinates (through the Opt=ModRedundant option) must not be overlooked! This option performes a geometry optimization at each step while maintaining the scanned variable constant, which is referred to as a Relaxed Potential Energy Surface (PES) Scan. Using internal coordinates becomes compulsory and a well-defined Z-Matrix is preferable.

Random ThoughtsChemical Sciences
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Way off topic post that I began writing around the last World Series in October 2009. ‘ Why do you like it? ‘ is the most recurrent question I get from my European friends and most in Mexico. The easy and short answer is because my dad got me into it since he likes it too. But what makes me keep on liking it? In few words I like it because it is complex.

Computational ChemistryMathematicsModelsTheoretical ChemistryChemical Sciences
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In this new post I will address some issues regarding the correct use of the terminology used about basis sets in ab initio calculations. One of the keys to achieve good results in ab initio calculations is to wisely select a basis set; however this requires some previous insight about the specific model to use, the system (molecule/properties) to be calculated and the computational resources at hand.

Random ThoughtsSilaghi-DumitrescuUBBChemical Sciences
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Yesterday, on December 25th prof. Silaghi passed away. He leaves us all, his students, co-workers, friends and relatives with a deep hole in our hearts. We all witnessed what a hard year he had in terms of health and we are solely comforted by the thought of him not suffering anymore. I hereby send my condolences to his wife, children and grand children hoping they find comfort and peace.