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Dr. Joaquin Barroso's Blog

Scientific log of a computational chemist - "Make like a molecule and React!"
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ChemistryComputational ChemistryDFTExcited StateFukuiChemical Sciences
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To calculate what the bonding properties of a molecule are in a particular excited state we can run any population analysis following the root of interest. This straightforward procedure takes two consecutive calculations since you don’t necessarily know before hand which excited state is the one of interest.

Computational ChemistryJCTCMolecular DynamicsPaperPhotochemistryChemical Sciences
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Photosynthetic organisms are so widespread around the globe they have adapted to various solar lighting conditions to thrive. The bacteria Blastochloris viridis absorbs light in the near infrared region of the electromagnetic spectrum, in fact, it holds the record for the longest wavelength (~1015 nm) absorbing organism whose Light Harvesting complex 1 (LHC1) has been elucidated.

Computational ChemistryGaussianModelsTheoretical ChemistryWhite PapersChemical Sciences
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Canonical Molecular Orbitals are–by construction–delocalized over the various atoms making up a molecule. In some contexts it is important to know how much of any given orbital is made up by a particular atom or group of atoms, and while you could calculate it by hand given the coefficients of each MO in terms of every AO (or basis set function) centered on each atom there is a straightforward way to do it in Gaussian.

ChemistryComputational ChemistryGoldInorganic ChemistryPaperChemical Sciences
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Stabilizing Gold in low oxidation states is a longstanding challenge of organometallic chemistry. To do so, a fine tuning of the electron density provided to an Au atom by a ligand via the formation of a σ bond. The group of Professor Rong Shang at the University of Nagasaki has accomplished the stabilization of an aurate complex through the use of a boron, nitrogen-containing heterocyclic carbene;

ChemistryRandom ThoughtsMoleculesChemical Sciences
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Molecules. Atoms glued by bonds; nuclei incarcerated by electrons; electrons forming an inhomogeneous gas contained not by outer walls but by an electrostatic potential in its interior ironically named ‘external potential’ . Molecules. The study object of chemists. The fundamental construct on which the chemical understanding of the universe relies.

ChemistryCodingComputational ChemistryDFTPatentsChemical Sciences
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Density Functional Theory is by far the most successful way of gaining access to molecular properties starting from their composition. Calculating the electronic structure of molecules or solid phases has become a widespread activity in computational as well as in experimental labs not only for shedding light on the properties of a system under study but also as a tool to design those systems with taylor-made properties.

Computational ChemistryComputational And Theoretical ChemistryExcitonExciton Energy TransferExcitonsChemical Sciences
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I’m very honored to have been invited to this edition of this long standing event, the Virtual Winter School of Computational Chemistry. In this talk I walk through the basics of what are excitons and how do they move or transfer across matter; and of course, a primer on how to calculate the energy transfer with Gaussian. This is a very basic introduction but I hope someone finds it useful.

Computational ChemistryInternetPhotochemistryPhotosysnthesisTalksChemical Sciences
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I’m very excited and honored to participate in this year’s Virtual Winter School on #CompChem. This event started back in 2015 and this year the list of participants includes Nobel Laureate and legend Roald Hoffmann. The topics will range from drug design to quantum chemistry on quantum computers. Additionally, two workshops will be given for ADF and Gaussian.

ArticlesChemical ScienceComputational ChemistryInorganic ChemistryJournalsChemical Sciences
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The word ‘ umpolung ‘ is not used often enough in my opinion, and that’s a shame since this phenomenon refers to one of the most classic tropes or deus ex machina used in sci-fi movies—prominently in the Dr. Who lore*—and that is ‘ reversing the polarity ‘. Now, reversing the polarity only means that for any given dipole the positively charged part now acquires a negative charge, while the originally

Computational ChemistryRMFQTTwitterComputational And Theoretical ChemistryTheoretical ChemistryChemical Sciences
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The Mexican Meeting on Theoretical Physical Chemistry is a national staple of our local scientific discipline. The nineteenth edition had to be a virtual conference due to sanitary restrictions still enforced in Mexico. Nevertheless, this was a successful meeting in which we tried new things, such as a live broadcast via our new official YouTube channel and a Twitter poster session covered under the hashtag #RMFQTXIX.