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Dr. Joaquin Barroso's Blog

Scientific log of a computational chemist - "Make like a molecule and React!"
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AcademiaComputational ChemistryMental HealthRandom ThoughtsDepressionChemical Sciences
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Mental health problems in graduate students have existed for ages. The constant and ever-increasing competition both in and out of the academic realm puts an extra toll on young students who already must deal with harsh economic conditions, an uncertain future, and the general unrecognition from society, not to mention sometimes a bullying environment from advisors.

ArticlesBloggingRandom ThoughtsWritingPaperChemical Sciences
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I’ve lately reviewed a ton of papers whose titles begin with some version of “ Computational studies of… “, “ Theoretical studies of… ” or even more subtly just subtitled “ A theoretical/computational study ” and even when I gotta confess this is probably something I’ve done once or twice myself, it got me thinking about the place and role of computational chemistry within chemistry itself.

BooksComputational ChemistryDFTLiteratureTheoretical ChemistryChemical Sciences
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Today’s science is published mostly in English, which means that non-English speakers must first tackle the language barrier before sharing their scientific ideas and results with the community; this blog is a proof that non-native-English speakers such as myself cannot outreach a large audience in another language.

Computational ChemistryHealthResearchCompChemAIDSChemical Sciences
Published

We’ve expanded the scope of our research interests from quantum mechanical calculations to docking and MedChem for over a year now; it has been a very interesting ride and a very rich avenue of research to explore. Durbis Castillo has led -out of his own initiative- this project and today he presents us with a guest post on the nuances of his project.

ACSComputational ChemistryCrystallographyDrug DeliveryInorganic ChemistryChemical Sciences
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Chemically actuating a molecule is a very cool thing to do and the Weak Link Approach (WLA) allows us to do precisely that through the reversible coordination of one or various organometallic centers to a longer ligand that opens or closes a macrocyclic cavity. All this leads to an allosteric effect so important in biological instances available in inorganic molecules.

BloggingComputational ChemistryCompChem2017BarrosoChemical Sciences
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2017 was a complicated year for various reasons here in Mexico (and some personal health issues) but nonetheless I’m very proud of the performance of everyone at the lab whose hard work and great skills keep pushing our research forward. Four new members joined the team and have presented their work at the national meeting for CompChem for the first time.

CodingComputational ChemistryDFTFukuiGaussianChemical Sciences
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One of the most popular posts in this blog has to do with calculating Fukui indexes, however, when dealing with a large number of molecules, our described methodology can become cumbersome since it requires to manually extract the population analysis from two or three different output files and then performing the arithmetic on them separately with a spreadsheet or something.

Computational ChemistryRMFQTTalksConferencesDensity Functional TheoryChemical Sciences
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A yearly tradition of this Comp.Chem. lab and many others throughout our nation is to attend the Mexican Meeting on Theoretical Physical Chemistry to share news, progress and also a few drinks and laughs. This year the RMFQT was held in Puebla and although unfortunately I was not able to attend this lab was proudly represented by its current members.