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FundingScienceGrantsRstatsBiological Sciences
Published

This post follows on from the last post on BBSRC Responsive Mode funding. Another frequent question from applicants is: “How much can I ask for?” One answer is: the same amount as successful grants. This information is freely available and can be downloaded from the UKRI website. All awarded grants can be searched (even those that have completed) using their database.

FundingScienceGrantsBiological Sciences
Published

This month I spent a lot of time evaluating proposals for BBSRC Committee D. At the same time a number of my colleagues were also preparing BBSRC applications for the next round. A question came up: Is it best to put Track Record before Case For Support or vice versa? If you have no idea what I mean, a brief explanation. The “Case for Support” is a document up to 8 pages which is the meat of a BBSRC Response Mode application.

ComputingInternet SafetyPi-holeRaspberry PiRPiBiological Sciences
Published

I have been running a pi-hole to block ads on my home network for a while. It’s great! Not only are ads blocked, but it speeds up internet browsing because… the ads do not load. I wondered if it would be possible to use a pi-hole to make a child-safe internet experience to protect the little people in the house. Sure, there are ways to do this in most routers but they are not ideal.

The Digital CellBooksWritingBiological Sciences
Published

Long-time readers might remember the short-lived series on quantixed called The Digital Cell. There is a reason why I stopped these posts, which I can now reveal… The Digital Cell will soon be a book! Published by Cold Spring Harbor Laboratory Press, The Digital Cell is a handbook to help cell and developmental biologists get to grips with programming, image analysis, statistics and much more.

PublishingImpact FactorJIFJournal Of Cell ScienceNature CommunicationsBiological Sciences
Published

There is an entertaining rumour going around about the journal Nature Communications . When I heard it for the fourth or fifth time, I decided to check out whether there is any truth in it. Sometimes it is put another way: cell biology papers drag down the impact factor of Nature Communications , or that they don’t deserve the high JIF tag of the journal because they are cited at lower rates. Could this be true?

ComputingFunPublishingBashCitationsBiological Sciences
Published

Time for an update to a previous post. For the past few years, I have been using an automated process to track citations to my lab’s work on Google Scholar (details of how to set this up are at the end of this post). Due to the nature of how Google Scholar tracks citations, it means that citations get added (hooray!) but might be removed (booo!). Using a daily scrape of the data it is possible to watch this happening.

Adventures In CodeComputingFunGenerative ArtIgorBiological Sciences
Published

A while back I visited Artistes & Robots in Paris. Part of the exhibition was on the origins of computer-based art. Nowadays this is referred to as generative art , where computers generate artwork according to rules specified by the programmer.

Adventures In CodeFunMusicAudacityPaulstretchBiological Sciences
Published

I was recently reminded of the wonders of paulstretch by a 8-fold slowed down version of Pyramid Song by Radiohead. Paulstretch is an audio manipulation widget that can stretch or compress the time of an audio recording. Note that it doesn’t “slow down” or “speed up” a recording, it resamples the audio and recasts it over a different time scale while maintaining the pitch.

Adventures In CodeComputingGarminRstatsRunningBiological Sciences
Published

Garmin Connect has a number of plots built in, but to take a deeper dive into all your fitness data, you need to export a CSV and fire up R. This post is a quick guide to some possibilities for running data.  There’s a few things that I wanted to look at. For example, how does my speed change through the year? How does that compare to previous years? If I see some trends, is that the same for short runs and long runs?

PublishingScienceBioRxivFluorescent ProteinsKnocksidewaysBiological Sciences
Published

We have a new preprint out – it is a cautionary tale about using GFP nanobodies in cells. This short post gives a bit of background to the work. Please read the paper if you are interested in using GFP nanobodies in cells, you can find it here. Paper in a nutshell: Caution is needed when using GFP nanobodies because they can inhibit their target protein in cells.