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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Interesting ChemistryFree EnergyGas PhaseSteel WheelChemical Sciences
Published

I do not play poker,‡ and so I had to look up a 5-4-3-2-1(A), which Wikipedia informs me is a 5-high straight flush, also apparently known as a steel wheel. In previous posts  I have suggested acids which can be ionised by (probably) 5, 4, 3 or  1 discrete water molecules in the gas phase;

Interesting ChemistryChristopher ReedOhioPenceChemical Sciences
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My previous posts have covered the ionization by a small number of discrete water molecules of the series of halogen acids, ranging from HI (the strongest, pKa -10) via HF (weaker, pKa 3.1) to the pseudo-halogen HCN (the weakest, pKa 9.2). Here I try out some even stronger acids to see what the least number of water molecule needed to ionize these might be. Firstly what must surely be the ultimate acid

GeneralInteresting ChemistryIonic SystemsChemical Sciences
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HCN is a weak acid (pKa +9.2, weaker than e.g. HF), although it does have an isomer, isocyanic acid or HNC (pka < +9.2 ?) which is simultaneously stronger and less stable. I conclude my halide acid series by investigating how many water molecules (in gas phase clusters) are required for ionisation of this “ pseudo-halogen ” acid.

GeneralInteresting ChemistryChemical Magnetic ShieldingsFree Energy/entropyGas-phase ClusterChemical Sciences
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Why is this post orphaned from the previous? In order to have the opportunity of noting that treating iodine computationally can be a little different from the procedures used for F, Cl and Br. As the nuclear charge increases proceeding down the periodic table, the inner electron shells start becoming relativistic.

GeneralInteresting ChemistryPencePostscriptChemical Sciences
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No doubt answers to the question posed in the previous post are already being obtained by experiment. Just in case that does not emerge in the next day or so, I offer a prediction here. The methodology is the same as before, and I have not tried to look for new isomeric forms compared with the structures found with HCl.

Interesting ChemistryReaction MechanismEnergyGas Phase ModelsJavaChemical Sciences
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According to Guggemos, Slavicek and Kresin, about 5-6![cite]10.1103/PhysRevLett.114.043401[/cite]. This is one of those simple ideas, which is probably quite tough to do experimentally. It involved blasting water vapour through a pinhole, adding HCl and measuring the dipole-moment induced deflection by an electric field.

Chemical ITGeneralACSGBPRoyal Society Of ChemistryChemical Sciences
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The title of this post refers to the site http://howopenisit.org/  which is in effect a license scraper for journal articles. In the past 2-3 years in the UK, we have been able to make use of grants to our university to pay publishers to convert our publications into Open Access (also called GOLD). I thought I might check out a few of my recent publications to see what http://howopenisit.org/ makes of them.

Interesting ChemistryFree EnergyLowest Energy ConformationNatural ProductSimulationChemical Sciences
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Steganone is an unusual natural product, known for about 40 years now. The assignment of its absolute configurations makes for an interesting, on occasion rather confusing, and perhaps not entirely atypical story. I will start with the modern accepted stereochemical structure of this molecule, which comes in the form of two separately isolable atropisomers.

Reaction MechanismCalculated Free EnergyChemical EducationJonathan PiardChemical Sciences
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The journal of chemical education has many little gems providing inspiration for laboratory experiments. Jonathan Piard reports one based on the reaction below[cite]10.1021/ed4005003[/cite]; here I investigate the mechanism of this transformation. There are two things going on here;

HistoricalInteresting ChemistryEnergyHigh Chemical ShiftsNew HampshireChemical Sciences
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Sometimes you come across a bond in chemistry that just shouts at you. This happened to me in 1989[cite]10.1039/C39890001722[/cite] with the molecule shown below. Here is its story and, 26 years later, how I responded. To start at the beginning, there was a problem with the measured 1 H NMR spectrum; specifically (Y=H, Z=O) there are supposedly 16 protons, but only 15 could be located. What had happened to the 16th?

Chemical ITGeneralCreated Using Spreadsheet SoftwareDerek LoweOxfordChemical Sciences
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Derek Lowe in his In the Pipeline blog is famed for spotting unusual claims in the literature and subjecting them to analysis. This one is entitled Odd Structures, Subjected to Powerful Computations. He looks at this image below, and finds the structures represented there might be a mistake, based on his considerable experience of these kinds of molecules. I expect he had a gut feeling within seconds of seeing the diagram.