Biological SciencesSubstack

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Bioinformatics, computational biology, and data science updates from the field. Occasional posts on programming.
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PapersAIBiological Sciences
Published

In cybersecurity, defenders have to get everything right. Cyber defense must patch every vulnerability, secure every endpoint, anticipate every exploit. Attackers, by contrast, only need to find one overlooked flaw. That imbalance, which has shaped decades of cyber conflict, has a biological analogue.

PapersR AIBiological Sciences
Published

Happy Friday, colleagues. It’s the end of the week and once again I’m going through my long list of idle browser tabs trying to catch up where I can. Lots of R and AI-related news this week. Subscribe now Strengthening nucleic acid biosecurity screening against generative protein design tools. This was a really cool paper published in Science this week from a team at Microsoft, Battelle, IDT, Twist, and others.

TILBiological Sciences
Published

Over the weekend I stumbled across an interesting conference paper: Evaluating and Improving Navigability of Wikipedia . The article shows if you follow the first link in the main text of an English Wikipedia article, and then repeat the process for subsequent articles, it’ll lead you to Philosophy 97% of the time. I had my doubts, so I gave this a try with a few topics close to me. From Data science

PapersR AIBiological Sciences
Published

Happy Friday, colleagues. It’s the end of the week and once again I’m going through my long list of idle browser tabs trying to catch up where I can. Lots of R and AI-related news this week. Subscribe now Emil Hvitfeldt: Slidecrafting (slidecrafting-book.com) . This is a really wonderful one-stop shop for tips on making beautiful slides with reveal.js and Quarto.

R Biological Sciences
Published

Last night we had our first event in the newly (re-)launched Charlottesville R Users (CRU) group. We had about 30 or so attendees — about half from academia and half from industry, with a few from local government organizations.

PapersR AIBiological Sciences
Published

Happy Friday, colleagues. Lots going on this week. Once again I’m going through my long list of idle browser tabs trying to catch up where I can. ElevenReader (no affiliation) has been helpful to catch up this week! Subscribe now The Arc Institute reported the first ever viable genomes with genome language models.