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GigaBlog
Data driven blogging from the GigaScience editors
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BiologyEvolutionGenomeGenomicsParasitesBiologieEnglisch
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The decline of global honeybee populations are a major environment concern, because of their vital role in our food systems and pollination of flowering plants. Twenty first century ’Omics is coming to the rescue, and published in GigaScience this week is an article that presents the genome and proteome of a mahor threat to bee colonies, the parasitic mite, Tropilaelaps mercedesae.

Open AccessPublishingAnnotationBrainBrainhackBiologieEnglisch
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Cheering Ourselves up with CUDDEL(s) and Hackathons We have been working closely with the Metabolomics community for a few years now, participating in hackathon events including BYO Data parties and Hack-the-Spec – ISA as a FAIR research object – thanks to our collaboration with the ISA Team at the Oxford e-Research Centre and funding from our BBSRC UK-China partnering award.

BiologyEvolutionGenome AssemblyGenomicsOpen DataBiologieEnglisch
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Not many tree species are iconic enough to have inspired Goethe love poems, but the distinctive and beautiful heart shaped leaves of ginkgo have made it a popular symbol in art and design. Coming from East Asia and having a long association with Buddhist temples and parks in China, Korea and Japan, it was thought to be extinct in the wild and only in more recent times were small wild populations identified in mountain groves in South West China.

TechnologyBig DataBiodiversityData Intensive EcologyEcologyBiologieEnglisch
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Taylor Noble As the ecology community expands, it is now adopting new ways of making sense of the plethora of data produced from diverse approaches, including ocean research, eco-genomics, limnology, and macrosystems ecology, through more integrative means – improving our understanding of biology in a broader sense.

TechnologyUsegalaxyBioinformaticsContainersGalaxyBiologieEnglisch
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Björn Grüning modelling one of our t-shirts. Nowadays, massive amounts of diverse data are generated in biomedical research. To manage it and extract useful information, bioinformatic solutions are needed and software must be developed. The development of a tool should always follow a similar process.

BiologyFishG10KGenomeGenome AssemblyBiologieEnglisch
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**Deep (ocean) sequencing. Big-(fish) data. **The ocean sunfish, must officially be one of the world’s weirdest creatures to enter the “genome club”, and have its genetic code mapped. Laying the most eggs of any other known vertebrate (up to 300,000,000 at a time), and starting out as the size of the head of a pin, sunfish grow to become to largest bony fish in the sea.

BiologyAppleGenomicsNGSPACbioBiologieEnglisch
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Gigascience this week published a high quality genome of the apple, the “golden delicious” variety, to be precise. Although a version of the Malus domestica genome has already been available, Xuewei Li et al .’s de novo assembly significantly improves on that previous ressource, using a healthy injection of long reads from third generation, “single-molecule” sequencing technology.

MedicineTechnologyBig DataGuest PostMedical DataBiologieEnglisch
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Building an open, community-supported, e-infrastructure for medical metabolomics data. The European Union’s Horizon 2020 research and innovation programme is funding the PhenoMeNal (Phenome and Metabolome aNalysis) project that aims to support data processing and analysis pipelines for molecular phenotype data generated from metabolomics applications.

BiologyOpen AccessBioinformaticsBOSCComputational BiologyBiologieEnglisch
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At Disney World infancy ends at 3, or at least that is the age children have to start purchasing tickets. It seemed appropriate to celebrate our 4th birthday there. Or at least at the #ISMB16 Computational Biology meeting that was held this week at the Walt Disney World Resort.