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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Reaction MechanismChemical BondingChemical ReactionChemistryDelocalized ElectronChemieEnglisch
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Bromoallene is a pretty simple molecule, with two non-equivalent double bonds. How might it react with an electrophile, say dimethyldioxirane (DMDO) to form an epoxide? Here I explore the difference between two different and very simple approaches to predicting its reactivity.

Chemical ITAcademiaAcademic PublishingArticle Processing ChargeAuthorChemieEnglisch
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This week the ACS announced its intention to establish a “ChemRxiv preprint server to promote early research sharing“. This was first tried quite a few years ago, following the example of especially the physicists. As I recollect the experiment lasted about a year, attracted few submissions and even fewer of high quality.

Crystal_structure_miningInteresting ChemistryChemical BondingSigma BondStereoelectronic EffectChemieEnglisch
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Here is a little molecule that can be said to be pretty electron rich. There are lots of lone pairs present, and not a few electron-deficient σ-bonds. I thought it might be fun to look at the stereoelectronic interactions set up in this little system.

Chemical ITAcrobatAnalysis SoftwareChemicalChemistryChemieEnglisch
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In March, I posted from the ACS meeting in San Diego on the topic of Research data: Managing spectroscopy-NMR, and noted a talk by MestreLab Research on how a tool called Mpublish in the forthcoming release of their NMR analysis software Mestrenova could help. With that release now out, the opportunity arose to test the system.

Crystal_structure_miningAcetalsAlkane StereochemistryAnomerAnomeric EffectChemieEnglisch
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The anomeric effect occurs at 4-coordinate (sp 3 ) carbon centres carrying two oxygen substituents and involves an alignment of a lone electron pair on one oxygen with the adjacent C-O σ*-bond of the other oxygen. Here I explore whether other centres can exhibit the phenomenon.

Chemical ITCrystal_structure_mining10.102110.110710.5517ChemieEnglisch
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I previously used data mining of crystal structures to explore the directing influence of substituents on aromatic and heteroaromatic rings. Here I explore, quite literally, a different angle to the hydrogen bonding interactions between a benzene ring and OH or NH groups. I start by defining a benzene ring with a centroid.

Crystal_structure_miningAsymmetric HydrogenationBenzeneBenzoElectrophileChemieEnglisch
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This is a follow-up to the post on exploring the directing influence of (electron donating) substituents on benzene[cite]10.1021/acs.jchemed.5b00346[/cite] with the focus on heteroaromatic rings such indoles, pyrroles and group 16 analogues (furans, thiophenes etc). The search query is shown above (and is available here[cite]10.14469/hpc/665[/cite]). As before, the distance is compared from an electrophile, modelled as