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GigaBlog

GigaBlog
Data driven blogging from the GigaScience editors
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TechnologyOpen SourceReproducibilityReproducible ResearchSoftwareBiologiaInglese
Pubblicato

Today GigaByte publishes its first Executable Research Article (ERA), using technology from Stencila and Code Ocean to showcase interactive and executable versions of the figures.

The post GigaByte and River Valley Technologies push the boundaries of Executable Research Articles using Stencila and Code Ocean appeared first on GigaBlog.

TechnologyGenome AssemblyGenomicsOpen SourceQ&ABiologiaInglese
Pubblicato

Today we publish the first update in 12 years describing what's new in SAMtools, and for the first time the associated BCFtools and HTSlib software library. Here is a Q&A with the authors.

The post Play it again, SAMtools. Q&A with the SAMtools team on 12 years of providing bioinformatics “glue” appeared first on GigaBlog.

BiologyAvian Phylogenomics ProjectBird GenomeBirdsG10KBiologiaInglese
Pubblicato

Ducks, Emu's, Platypus and Echidna's, oh my! New work on the duck and other egg-laying animal genomes helps crack sex chromosomes evolution and diversity in a number of bird and monotreme species.

The post Cracking sex chromosome evolution via egg-laying birds and mammals appeared first on GigaBlog.

PublishingCOVID19Disease OutbreaksGenomicsGigaByteBiologiaInglese
Pubblicato

Looking back at this unusual year, we are happy to report that GigaScience not only kept going under difficult circumstances, publishing outstanding examples of Big Data science and introducing innovations in the review process. We also opened a new chapter with the launch of a sister journal, GigaByte .

The post New beginnings during a pandemic – the COVID year in review appeared first on GigaBlog.

TechnologyGenomicsInfectious DiseaseLong Read SequencingNanoporeBiologiaInglese
Pubblicato

The first comprehensive mobile genome analysis application, iGenomics, is now available for download and use on an iOS smartphone . By pairing an smartphone with a handheld DNA sequencer, users will be able to create a mobile genetics laboratory, reminiscent of the Star Trek’s “tricorder”. Just published is an article presenting  iGenomics, the first DNA sequencing toolkit that can run on a smartphone.