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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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BHLCiteBankMendeleyScienze informatiche e dell'informazioneInglese
Pubblicato

Here are some quick notes on how BHL could use Mendeley as a "CiteBank". As a repository of bibliographic data If the goal is to assemble a "bibliography of life" then there are various ways this could be done. Taxon-specific bibliographies Create groups that are taxon-specific (or find existing groups in Mendeley.

BHLBHL-EuropeTaxonomic NameScienze informatiche e dell'informazioneInglese
Pubblicato

I've recently updated my database of links between animal taxonomic names and literature identifiers, which now has over 280,000 names linked to some form of identifier (127,000 of these being DOIs). You can see the current version here:http://iphylo.org/~rpage/itaxon/As an experiment I've added a feature to list the number of names for each journal.

IPadNLM DTDPLoSXMLXSLTScienze informatiche e dell'informazioneInglese
Pubblicato

One of the things I keep revisiting is the way we display scientific articles. Apart from Nature's excellent iPhone and iPad apps, most efforts to re-imagine how we display articles are little more than glorified PDF viewers (e.g., the PLoS iPad app).Part of the challenge is that if we make the article more interactive we immediately confront the problem of how to link to other content.

Australian Faunal DirectoryCodeCouchDBListScienze informatiche e dell'informazioneInglese
Pubblicato

Quick note to self about exporting data from my Australian Faunal Directory on CouchDB project. To export data from a CouchDB view you can use a list function (see Formatting with Show and List). Following the example on the Kanapes IDE blog, I created the following list function: { "_id": "_design/publication", "_rev": "14-467dee8248e97d874f1141411f536848", "language": "javascript", "lists": { "tsv": "function(head,req) { var row;

GoogleMetricsPandoScienze informatiche e dell'informazioneInglese
Pubblicato

According to Google Analytics BioStor has experienced a big drop in traffic since the start of October:At one point I'm getting something like 4500 visits a week, now it's just over a thousand a week. I'm guessing this is due to Google's 'Panda' update. I suspect part of the problem is that in terms of text content BioStor is actually pretty thin.

MendeleyScienze informatiche e dell'informazioneInglese
Pubblicato

The latest addition to my mapping of taxonomic names to the literature (http://iphylo.org/~rpage/itaxon/) is the ability for authors with Mendeley accounts to find the names they've published. This is an extension of the "I wrote that" tool I developed earlier.Let's say I want to show the names that a given author has published.

BHLDOIHandlesIdentifiersIONScienze informatiche e dell'informazioneInglese
Pubblicato

Following on from my earlier post Linking taxonomic names to literature: beyond digitised 5×3 index cards I've been slowly updating my latest toy:http://iphylo.org/~rpage/itaxonThis site displays a database mapping over 200,000 animal names to the primary literature, using a mix of identifiers (DOIs, Handles, PubMed, URLs) as well as links to freely available PDFs where they are available.

BHLBibliography Of LifeIONViBRANTWikispeciesScienze informatiche e dell'informazioneInglese
Pubblicato

David King et al.'s paper "Towards the bibliography of life" http://dx.doi.org/10.3897/zookeys.150.2167 has just appeared in a special issue of ZooKeys . I've written a number of posts on this topic, so I've a few comments.King et al. survey some of the issues, but don't really tackle the big issue of how we're going to build this.

BHLCitationDOIEOLLinkingScienze informatiche e dell'informazioneInglese
Pubblicato

Browsing EOL I stumbled upon the recently described fish Protoanguilla palau , shown below in an image by rairaiken2011:Two things struck me, the first is that the EOL page for this fish gives absolutely no clue as to where you would to find out more about this fish (apart from an unclickable link to the Wikipedia page http://en.wikipedia.org/wiki/Protoanguilla - seriously, a link that isn't clickable?), despite the fact this fish has been

GithubHistory FlowSVGVisualisationScienze informatiche e dell'informazioneInglese
Pubblicato

Inspired by a comment on my post Visualising edit history of a Wikipedia page, the code I use to make history flow diagrams like the one below is now in GitHub at https://github.com/rdmpage/wikihistoryflow.There is also a live version at http://iphylo.org/~rpage/wikihistoryflow.