Scienze informatiche e dell'informazioneIngleseBlogger

iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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DuplicationErrorMatchingMendeleyMergingScienze informatiche e dell'informazioneInglese
Pubblicato

Browsing Mendeley I found the following record: http://www.mendeley.com/research/description-larva/. This URL is for a paperwhich apparently has the DOI doi:10.1645/GE-2580.1. This is strange because Zootaxa doesn't have DOIs. The DOI given resolves to a paper in the Journal of Parasitology :Now, this paper has it's own record in Mendeley.OK, so this is weird..., but it gets weirder.

BioStorCitationCitation MatchingMatchingMetadataScienze informatiche e dell'informazioneInglese
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Some quick half-baked thoughts on citation matching. One of the things I'd really like to add to BioStor is the ability to parse article text and extract the list of literature cited.

APIBHLBioStorFlickrInterfaceScienze informatiche e dell'informazioneInglese
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Following on from my previous post on BHL apps and a Twitter discussion in which I appealed for a "sexier" interface for BHL (to which @elywreplied that is what BHL Australia were trying to do), here are some further thoughts on improving BHL's web interface. Build a new interface A fun project would be to create a BHL website clone using just the BHL API.

CrossrefDOIDuplicatesHandleHS_ALIASScienze informatiche e dell'informazioneInglese
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As part of a project to map taxonomic citations to bibliographic identifiers I'm tackling strings like this (from the ION record urn:lsid:organismnames.com:name:1405511 for Pseudomyrmex crudelis ):Systematics, biogeography and host plant associations of the Pseudomyrmex viduus group (Hymenoptera: Formicidae), Triplaris- and Tachigali-inhabiting ants. Zoological Journal of the Linnean Society, 126(4), August 1999: 451-540.

BHLChallengeHOCRIPadIPhoneScienze informatiche e dell'informazioneInglese
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Since I won't be able to be at the Biodiversity Heritage Library's Life and Literature meeting I thought I'd share some ideas for their Life and Literature Code Challenge. The deadline is pretty close (October 17) so having ideas now isn't terribly helpful I admit. That aside, here are some thoughts inspired by the challenge.

AnnotationNCBINSFTree Of LifeScienze informatiche e dell'informazioneInglese
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Last week I was at the NSF "Assembling, Visualising and Analysing the Tree of Life" Ideas Lab, run by KnowInnovation.com/. It was an interesting experience, essentially a structured week of brainstorming ideas.One thing I came away with is the feeling that our notions of the "tree of life" are fuzzy, contradictory, and often probably unobtainable.

AVATOLClose To The BoneIdeatorNSFScienze informatiche e dell'informazioneInglese
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As part of the NSF "Assembling, Visualising and Analysing the Tree of Life" Ideas Lab that I took part in earlier this week I had an assessment of my "problem solving style" carried out using a service called FourSight.

PhylogenyTalkVisualizationVizbiScienze informatiche e dell'informazioneInglese
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The talks from the 2001 workshop on Visualizing Biological Data (VizBi 2011) are now available on Vimeo. There were some great talks at VizBi, especially the keynotes (the "featured videos" on the Vimeo page for VizBi).My own (slightly breathless) talk was on phylogeny visualisation, which you can watch below. Visualization of phylogenetics &

APIHack4knowledgeMendeleyQuantum TreemapSVGScienze informatiche e dell'informazioneInglese
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I'm taking a virtual part in Mendeley's Hack4Knowledge event. I'm using this a chance to explore some ideas about building novel interfaces to bibliographic data in Mendeley. One idea is to display a user's entire library in one screen. I think the user interfaces employed by most bibliographic software are too conservative and there some cool things that could be done.

BioStorLuceneSearchSolrScienze informatiche e dell'informazioneInglese
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Prompted by the appearance on the BHL blog of an article about BioStor I've thinking about how to improve what is basically a fairly clunky tool.One major weakness is searching the collection of nearly 40,000 articles extracted from BHL. Note the word "extracted." BioStor isn't a tool like PubMed or Google Scholar where the goal is to find articles on a topic.