Source distributions and Windows installers for Biopython 1.62 are now available from the downloads page on the official Biopython website and ( soon ) from the Python Package Index (PyPI). Python support This is our first release of Biopython which officially supports Python 3 . Specifically, this is supported under Python 3.3. Older versions of Python 3 may still work albeit with

Hello from Berlin, where the pre-BOSC informal CodeFest 2013 meeting is already underway. We’re looking forward to seeing even more of you on Friday and Saturday for BOSC 2013.

We are pleased to announce the release of BioRuby 1.4.3.0001. This new release fixes the following bugs. “gem install bio” failed with Ruby 2.0 or later versions. lib/bio/db/gff.rb script encoding issue Bio::Blast::Default::Report parse error when subject sequence contains spaces. For more information, see RELEASE_NOTES.rdoc and ChangeLog.

Source distributions and Windows installers for Biopython 1.61 are now available from the downloads page on the Biopython website and from the Python Package Index (PyPI). The updated Biopython Tutorial and Cookbook is online ( PDF). Platforms/Deployment We currently support Python 2.5, 2.6 and 2.7 and also test under Python 3.1, 3.2 and 3.3 (including modules using NumPy), and Jython 2.5 and PyPy 1.9 (Jython and PyPy do not

Agenda Old business Sep 2012 BoD meeting minutes New business Election of new Board members. Nominated candidate is Chris Fields.

The Open Bioinformatics Foundation (OBF) will be holding a public Board of Directors meeting on Tuesday, 13 Nov, 2012, at 11.30am EST (8.30am PST, 17:30 CET, 16:30 UTC/GMT). The meeting will be held online or over conference call.

Our aging server which has run for 5+ years the OBF sites has finally reached end of its lifespan. We are currently migrating sites to AWS volumes and sites for a temporary period while we decide about how to continue to support these services in the future.  There will be some downtime while the all-volunteer OBF admin team makes time to fix this.

I am very pleased to announce that the Open Bioinformatics Foundation (O|B|F) is now a Software in the Public Interest (SPI) associated project, rather than its own not-for-profit incorporation. An electronic vote of O|B|F members on whether or not to provisionally approve the invitation from SPI closed yesterday at 19:00 UTC.

Agenda Old business 2011 December BoD meeting minutes New business Approval of changes to O|B|F Bylaws Minutes Venue: held by WebEx conference with audio bridge through phone (donated by BioTeam), scheduled for Sep 11, 2012, 11.30am EDT (15:30 UTC) Attending: Directors: Hilmar Lapp, Nomi Harris, Chris Dagdigian, Jason Stajich, Peter Cock Guests: Scott Markel Minutes: Hilmar

We are pleased to announce the release of BioRuby 1.4.3. This new release fixes bugs existed in 1.4.2 and improves portability on JRuby and Rubinius. Here is a brief summary of changes. Bio::KEGG::KGML bug fixes and new class Bio::KEGG::KGML::Graphics for storing a graphics element. Many failures and errors running on JRuby and Rubinius are resolved. Strange behavior related with “circular require” is fixed.

Earlier this year BioRuby and then Biopython and BioPerl started using Travis-CI.org, a hosted continuous integration service for the open source community, to run their unit tests automatically whenever their GitHub repositories are updated: BioRuby Biopython BioPerl The BioRuby team are also using Travis-CI for automated testing of their new ‘plugin’ ecosystem, BioRuby Gems, or BioGems.