Scienze informatiche e dell'informazioneIngleseHugo

rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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CitationsMetadataPackagesScienze informatiche e dell'informazioneInglese
Pubblicato
Autori Maëlle Salmon, Scott Chamberlain, Karthik Ram

Scientists rarely cite research software they use as part of a research project. As a consequence, the software and the time spent developing and maintaining it becomes an invisible scholarly contribution. Furthermore, this lack of visibility means that incentives to produce high quality, sustainable software are missing. Among many reasons why software is not cited, one is the lack of a clear citation information from package developers.

Software Peer ReviewPackagesCommunityCoderData-mungingScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Erik Bülow

A new R-package, coder, has been developed, peer-reviewed by rOpenSci, accepted by CRAN, and published in a paper by the Journal of Open Source Software (JOSS). In this blog post, I will explain why this package might be useful for (epidemiological/medical/health care related) research.Clinical mess Once upon a time, in countries not far from ours, there were MDs and nurses making up funny names for any diseases they encountered.

Software Peer ReviewPackagesCommunityReproducible ResearchHigh Performance ComputingScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Will Landau

Make 1 -like pipelines enhance the integrity, transparency, shelf life, efficiency, and scale of large analysis projects.With pipelines, data science feels smoother and more rewarding, and the results are worthy of more trust. targets install.packages("targets") The targets 2 package is a new pipeline toolkit for R.It recently cleared software review, and it is now on CRAN.

MagickImagesPackagesTech NotesScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Jeroen Ooms

It has been a while since we posted an update about magick, but behind the scenes we are constantly tweaking and improving this package, which has become a very mature and complete toolkit for image processing in R. Over the past year, we did 6 CRAN releases, containing many small features and fixes, but perhaps more importantly, the package is getting betting better due to updates of the underlying ImageMagick library.

TestingSoftwareBookBookdownVcrScienze informatiche e dell'informazioneInglese
Pubblicato
Autori Maëlle Salmon, Scott Chamberlain

More and more R packages access resources on the web, and play crucial roles in workflows.Examples from the rOpenSci suite of packages include rromeo, GSODR, qualtRics, rnassqs, and many, many others.Like for all other packages, appropriate unit testing can make them more robust.However, unit testing of these packages can bring special challenges: dependence of tests on a good internet connection, testing in the absence of authentication

BaseSetSoftware Peer ReviewData-mungingPackagesCommunityScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Lluís Revilla Sancho

In this post I will explain the history behind BaseSet then a brief introduction to sets, followed by showing what you can do with BaseSet.Brief BaseSet history I study diseases to try to find what causes them at a research institute associated with an hospital.Thanks to recent technological advances we can analyze many things from a single patient’s sample.Having so much information available can be overwhelming, making it difficult to find

Code Of ConductEventsGovernanceCommunityScienze informatiche e dell'informazioneInglese
Pubblicato
Autori Stefanie Butland, Scott Chamberlain, Mark Padgham, Kara Woo

Our community is our best asset. It’s so important to us, it’s in our mission statement. We recognize that communities are not inclusive by default; they require deliberate attention, including an enforceable Code of Conduct. rOpenSci is committed to providing a safe, inclusive, welcoming, and harassment-free experience for everyone.

CommunityCode Of ConductGovernanceEventsScienze informatiche e dell'informazioneInglese
Pubblicato
Autori Stefanie Butland, Scott Chamberlain, Kara Woo

The rOpenSci community is supported by our Code of Conduct with a clear description of unacceptable behaviors, instructions on how to make a report, and information on how reports are handled. We, the Code of Conduct Committee, are responsible for receiving, investigating, deciding, enforcing and reporting on all reports of potential violations of our Code.

Software Peer ReviewPackagesLinguisticsPhoneticsSound AnalysisScienze informatiche e dell'informazioneInglese
Pubblicato
Autore George Moroz

Science craft As a field linguist, I have spent a lot of time working in villages in the Caucasus, collecting audio from speakers of indigenous languages. The processing of such data involves a lot of time-consuming tasks, so during my field trips I created my own pipeline for data collection.