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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Software Peer ReviewCommunityAPIData-accessData-retrievalScienze informatiche e dell'informazioneInglese
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The United States Deparment of Agriculture National AgriculturalStatistics Service (USDA-NASS) provides a wide range of agriculturaldata that includes animal, crop, demographic, economic, andenvironmental measures across a number of geographies and time periods.This data is available by direct download or queriable via theQuick Stats interface.

CommunityScienze informatiche e dell'informazioneInglese
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rOpenSci thrives because of volunteer contributions from community members - submitting and reviewing R packages, serving as editors for software peer review, writing blog posts, sharing information about packages and resources, contributing code and documentation and answering others’ questions. Recently our fiscal sponsor, NumFOCUS, gave us an opportunity to nominate two contributors for recognition at the NumFOCUS annual summit.

Software Peer ReviewPackagesCommunityData-accessReproducibilityScienze informatiche e dell'informazioneInglese
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Studies of muscle physiology often rely on closed-source, proprietary software for not only recording data but also for data wrangling and analyses. Although specialized software might be necessary to record data from highly-specialized equipment, data wrangling and analyses should be free from this constraint.

CommunityEventsCommunity CallReproducibilityReproducible-researchScienze informatiche e dell'informazioneInglese
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To the uninitiated, software testing may seem variously boring, daunting or bogged down in obscure terminology. However, it has the potential to be enormously useful for people developing software at any level of expertise, and can often be put into practice with relatively little effort. Our 1-hour Call will include two speakers and at least 20 minutes for Q &

GrantInfrastructureMetricsFundingScienze informatiche e dell'informazioneInglese
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Autore Karthik Ram

Today we are pleased to announce that we have received new funding from the Gordon and Betty Moore Foundation. The $894k grant will help us improve infrastructure for R packages and enable us to move towards a science first package ecosystem for the R community. You may have already noticed some developments on this front when we announced our automated documentation server back in June.

Software Peer ReviewCommunitySoftwarePackagesTidyncScienze informatiche e dell'informazioneInglese
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Autore Michael Sumner

In May 2019 version 0.2.0 of tidync was approved by rOpenSci and accepted to CRAN. Here we provide a quick overview of the typical workflow with some pseudo-code for the main functions in tidync. This overview is enough to read if you just want to try out the package on your own data.

Software Peer ReviewPackagesCommunitySkimrScienze informatiche e dell'informazioneInglese
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Autori Michael Quinn, Elin Waring

Theme song: PSA by Jay-Z We announced the testing version of skimr v2 onJune 19, 2018. After more than ayear of (admittedly intermittent) work, we’re thrilled to be able to say thatthe package is ready to go to CRAN. So, what happened over the last year? Andwhy are we so excited for v2? 🔗Wait, what is a “skimr”? skimr is an R package for summarizing your data.

Software Peer ReviewPackagesCommunityOpen-dataDataScienze informatiche e dell'informazioneInglese
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In early September, the version 2.0.0 of rmangal was approved byrOpenSci, four weeks later it made it to CRAN. Following-up on our experience wedetail below the reasons why we wrote rmangal, why we submitted our package torOpenSci and how the peer review improved our package.

NewsletterPdftoolsTabulizerWritexlRorcidScienze informatiche e dell'informazioneInglese
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🔗rOpenSci HQ What would you like to hear about in an rOpenSci Community Call? We are soliciting your “votes” and new ideas for Community Call topics and speakers. Find out how you can influence us by checking out our new Community Calls repository. Videos, speaker’s slides, resources and collaborative notes from our Community Call on Reproducible Workflows at Scale with drake are posted. Help wanted!

CommunityPackagesUse CasesVisdatSkimrScienze informatiche e dell'informazioneInglese
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We want to know how you use rOpenSci packages and resources so we can give them, their developers, and your examples more visibility. It’s valuable to both users and developers of a package to see how it has been used “in the wild”. This goes a long way to encouraging people to keep up development knowing there are others who appreciate and build on their work.

APICranInfrastructureTech NotesScienze informatiche e dell'informazioneInglese
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Autore Scott Chamberlain

If you have an R package on CRAN, you probably know about CRAN checks. Each package on CRAN, that is not archived on CRAN 1 , has a checks page, like this one for ropenaq:https://cloud.r-project.org/web/checks/check_results_ropenaq.html The table above is results of running R CMD CHECK on the package on a combination of different operating systems, R versions and compilers.