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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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OrcidRorcidDescTech NotesScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Maëlle Salmon

Proper identification of individuals is crucial for acknowledging andstudying their scientific work, be it journal articles or pieces ofsoftware. In this tech note, one year after CRAN started supportingORCIDs, we shall explain why and how to use unique author identifiers inDESCRIPTION files.Why use ORCIDs on CRAN? When analyzing the authorship of CRAN packages, one can look at authors’names and email addresses.

PackagesGifAnimationVideoAvScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Jeroen Ooms

At rOpenSci we are developing on a suite of packages that expose powerful graphics and imaging libraries in R. Our latest addition is av – a new package for working with audio/video based on the FFmpeg AV libraries.

CommunityEventsCommunity CallScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Stefanie Butland

Do you have code that accompanies a research project or manuscript? How do you review and archive that code before you submit a paper? Our next Community Call will present different perspectives on this hot topic, with plenty of time for Q&A.What’s the culture of the group around feedback and code collaboration?What are the use cases?What are some practices that can adopted?

CommunitySoftwareSoftware Peer ReviewPackagesOutcomerateScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Rafael Pilliard Hellwig

Background Surveys are ubiquitous in the social sciences, and the best of them are meticulously planned out. Statisticians often decide on a sample size based on a theoretical design, and then proceed to inflate this number to account for “sample losses”. This ensures that the desired sample size is achieved, even in the presence of non-response.

MarkdownR MarkdownXml2CommonmarkTinkrScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Maëlle Salmon

Remember our recent post showing that one can wrangle Markdown filesprogrammatically without regex? Thattech note showed how to convert Markdown bodies to XML in order toextract information from them.

CommunitySoftwareSoftware Peer ReviewPackagesData AccessScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Max Joseph

Hundreds of thousands of people in east Africa have been displaced and hundreds have died as a result of torrential rains which ended a drought but saturated soils and engorged rivers, resulting in extreme flooding in 2018.This post will explore these events using the R package smapr, which provides access to global satellite-derived soil moisture data collected by the NASA Soil Moisture Active-Passive (SMAP) mission and abstracts away some of

CommunityMeetingsScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Stefanie Butland

You can find members of the rOpenSci team at various meetings and workshops around the world. Come say ‘hi’, learn about how our software packages can enable your research, or about our process for open peer software review and onboarding, how you can get connected with the community or tell us how we can help you do open and reproducible research.Where’s rOpenSci?

ReproducibilityReproducible ResearchTidydataDatasharingSoftwareScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Greg Finak

Sharing data sets for collaboration or publication has always been challenging, but it’s become increasingly problematic as complex and high dimensional data sets have become ubiquitous in the life sciences. Studies are large and time consuming; data collection takes time, data analysis is a moving target, as is the software used to carry it out.

CodemetaCodemetarMarkdownXml2CommonmarkScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Maëlle Salmon

A while ago weonboarded anexciting package, codemetarby Carl Boettiger. codemetar is an R specificinformation collector and parser for the CodeMetaproject. In particular, codemetar candigest metadata about an R package in order to fill the termsrecognized by CodeMeta. This meansextracting information from DESCRIPTION but also from e.g. continuousintegration 1 badges in the README!

MarkdownR MarkdownXml2CommonmarkTech NotesScienze informatiche e dell'informazioneInglese
Pubblicato
Autore Maëlle Salmon

You might have read my blog post analyzing the social weather ofrOpenScionboarding,based on a text analysis of GitHub issues. I extracted text out ofMarkdown-formatted threads with regular expressions. I basicallyhammered away at the issues using tools I was familiar with until itworked! Now I know there’s a much better and cleaner way, that I’llpresent in this note. Read on if you want to extract insights abouttext, code, links, etc.