It’s been an interesting week or so in the Chemistry online world. Following on from my musings about data services and the preparation I was doing for a talk the week before last I asked Tony Williams whether it was possible to embed spectra from ChemSpider on a generic web page in the same way that you would embed a YouTube video, Flickr picture, or Slideshare presentation.

There is an interesting meta-discussion going on in a variety of places at the moment which touch very strongly on my post and talk (slides, screencast) from last week about “web native” lab notebooks.

This is an important discussion that has been going on in disparate places, but primarily at the moment is on the Open Science mailing list maintained by the OKF (see here for an archive of the relevant thread). To try and keep things together and because Yishay Mor asked, I thought I would try to summarize the current state of the debate.

The issue of licensing arrangements and best practice for making data available has been brewing for some time but has just recently come to a head. John Wilbanks and Science Commons have a reasonably well established line that they have been developing for some time. Michael Nielsen has a recent blog post and Rufus Pollock, of the Open Knowledge Foundation, has also just synthesised his thoughts in response into a blog essay.

Euan Adie has asked for some help to do further analysis on the comments made on PLoS ONE articles. He is doing this via crowd sourcing through a specially written app at appspot to get people to characterize all the comments in PLoS ONE. Euan is very good at putting these kind of things together and again this shows the power of Friendfeed as a way of getting the message out.

This is a case of a comment that got so long (and so late) that it probably merited it’s own post. David Crotty and Paul (Ling-Fung Tang) note some important caveats in comments on my last post about the idea of the “web native” lab notebook. I probably went a bit strong in that post with the idea of pushing content onto outside specialist services in my effort to try to explain the logic of the lab notebook as a feed.

At Science Online 09 and at the Smi Electronic Laboratory Notebook meeting in London later in January I talked about how laboratory notebooks might evolve. At Science Online 09 the session was about Open Notebook Science and here I wanted to take the idea of what a “web native” lab record could look like and show that if you go down this road you will get the most out if you are open.

I love Stephen Sondheim musicals. In particular I love the way he can build an ensemble piece in which there can be 10-20 people onstage, apparently singing, shouting, and speaking complete disconnected lines, which nonetheless build into a coherent whole.

Following on from Science Online 09 and particularly discussions on Impact Factors and researcher incentives (also on Friendfeed and some video available at Mogulus via video on demand) as well as the article in PloS Computational Biology by Phil Bourne and Lynn Fink the issue of unique researcher identifiers has really emerged as absolutely central to making traditional publication work better,

I should be putting something together for the actual sessions I am notionally involved in helping running but this being a very interactive meeting perhaps it is better to leave things to very last minute. Currently I am at a hotel at LAX awaiting an early flight tomorrow morning.

In a few hours I will be giving a short presentation to the whole of the PSB conference on the workshop that we ran on Monday. We are still thinking through the details of what has come out of this and hopefully the discussion will continue in any case so this is a personal view. The slides for the presentation are available at Slideshare. To me there were a couple of key points that came out.