academic publishing: unfiltered and uncensored.

I know you are conditioned to think that what you are researching has to be novel.  But let’s think about it for a second.

The cult of novelty

Peer review is a staple of science, a seemingly inescapable barrier that every researcher must cross in order to share their work with the world. The internet is awash with complaints about Reviewer #2 and long, drawn out review processes. Despite this, most academics believe peer review to be a gold standard process that protects the scientific record from poor quality studies.

A potted history of peer review - Part 1

Before starting - what is Omics Data?

Omics data represent massive volumes of information on genomes, epigenomes, transcriptomes — you name it. They’ve become a favorite among researchers, reviewers, and publishers. But at what cost? I’m not even talking about the huge financial investments it takes to generate good quality data with proper replicates.

FAIR and Square? The Challenges of Ethical Omics Data Sharing

The “publish or perish” culture pushes researchers to publish papers (regardless of the state of their research) for career survival. Academic jobs are tied to people’s publication records; and although change is happening, it is at a glacial pace. Since the system is gamified in this way, people are tempted to play. And they play to “win”.  This leads to many

 side effects

that distort the way science is done.

Symptomatic treatment of a broken system

Two years ago at a conference, I was talking to a professor whom I deeply respect, telling him that I honestly do not know where my

 home

is. I left the country I grew up in when I was 18, spent 11 years in another one pursuing my studies, moved again to a new country to get the postdoc experience I wanted, and here I was 7 years later, moving yet again to another country for academic reasons.

Academic nomadism and impostor syndrome

Just like the anonymous commenter on a reddit thread or a social media post, I think the anonymous reviewer suffers from the “disinhibition effect” that comes with knowing that they cannot be identified. A reviewer “persona” is created and suddenly gives them the option to be especially harsh (sometimes cruel…). Would they have made the same comment face to face, at a conference, for example?

The disinhibited reviewer

How to catch a predator in the academic publisher quagmire.

 Dear esteemed Professor Waltho,


 I would like to take the privilege to invite you to contribute your research/discoveries to our overly open access journal. Simply email your manuscript as an attachment to below email...

This is a typical opening from one of countless spam emails that flood the inboxes of scientists worldwide every day.

Predatory journals mirror the flaws in academic publishing.

Last Friday, thousands of scientists protested against US government cuts on research funding with the

 Stand up for Science

movement.  There were more than 30 demonstrations all over the US, and a handful in other countries (several of them taking place in France). So, what does it mean to “Stand up for Science”?

Stand up for Science...and also for the way it's shared

Act I: Enchantment It usually starts early on.  You are looking at something. A couple of bugs on the ground. A star in the sky. The veins on a leaf. The stream of bubbles in your soda. You are just observing. But then you start wondering.

 What exactly is this?

You are curious, you want to know more.

 How does it work? Is it known?

You ask questions.. that lead to more questions.

You are a scientist: a play in three acts

The first time I heard the expression "low hanging fruit" in science, I got excited. Simple projects that seem to be straightforward – seemingly untouched by other scientists. Projects you could pluck right off the tree and bite into, reaping the succulent fruity juice of success. In three months it would be wrapped up. An easy publication.

The perils of low hanging fruit

Leal Oburoglu

Something I never even questioned when starting my PhD has now become a daily struggle in my mind.  When I first contributed to a scientific article in 2012, I remember that picking the name I will use as an author was a substantial decision (“Do I add my middle name?...”). After all, I did not want to be confused with another scientist later on during my career (yes, I am now aware of ORCID).  Sounds like an unimportant decision.

What’s in an “academic” name?

If you are reading this, you have definitely heard of “Publish or Perish” culture. With the advent of predatory journals and journal hijacking scams, this saying has been modified to “Publish high-impact or Perish” in the last decade. There came a point in my career, around the fourth year of my postdoc, when a PI (whom I respect profoundly) told me that I needed a paper.  “Any paper.”

Publish and try not to perish in the process

Citations are crucial to academia. For me, they’re the literal way of saying, “I stand on the shoulders of giants.” They allow us to build on existing knowledge, floor by floor, forming an ever-growing tower. As a PhD student, I’ve just begun laying my own bricks in this structure. So when my work got cited for the first time, I was thrilled.

Wild citations and where to find them

Sam Van Gele

Publishing Open Access (OA) has always been something important to me. It stems from my utopian belief that science should be for everyone and that the funders (taxpayers) should have access to it. Most of my publications are Open Access, something I was somewhat proud of as a novice researcher.

Open Access ≠ Open Access - Navigating the License Alphabet

I was recently at a conference – the friends-and-family kind. International, sure, but mostly populated by academically 'related' researchers. A chance to get all together, talk about new projects, showcase current research, see if there is a possibility for interesting collaborations. A nice sense of community, lighthearted and caring.  This conference also had a student track.

The Flattening Soul-Crushing Effect of Cradling Yourself in a Bubble

Impact factor.

The power of this term is unparalleled in academia. The word “impact” by itself is already so profoundly heavy. And second in line to it, would be

 tenure.

Law &amp; disorder in academic publishing

At times, critique could be mistaken as criticism, even though it’s not meant to be. Still, even critique is difficult to deal with.  With time, I learned to ask “W

 hat is the intention behind this comment?

” to avoid unnecessary arguments.  I don’t guarantee that it always works.

How to survive reviewers' comments. No, it's a question.

Luís Oliveira

Some time ago, at a friend’s party, a conversation came up about the peer-reviewing process. I know what you might be thinking, my dear reader. “Wow, this guy must be fun at parties”. But really, I am. I promise I was not enforcing an academic topic on a non-academic audience. I think… Crap, now I’m not sure. This friend of mine – it is important to mention – is not an academic.

But Who Reviews the Reviewer?

Being a researcher implies a long stretch of studies at the university to specialize in a certain field. To me personally, it felt like I just kept studying and studying, year after year, and… here I am.  One day, when I was 18 I went to the university and I am still there. I have come to realize that I never really mentally switched from being a student to being a professional or having a job.

Spoiler: there is no end to this

For my very first blog post on this platform, I got inspired by the name of the blog support system itself—

 Ghost

. It made me reflect on a phenomenon that many early-career researchers quietly experience: ghost and ghosted authorship in scientific publications. Let’s plot the scene: You’re a PhD student or a young postdoc, and your manuscript is finally ready for submission.

The Ghost / Ghosted Authorship Dilemma

In the 20

 th

century, Tom Clancy’s espionage novels became so popular that his publisher started hiring ghostwriters to respond to the popular demand. But in science, such a thing would be unthinkable, right? No one should contribute to a research paper and not receive their due credit. In peer reviewing, however… Everyone in academia knows it happens, but it’s treated like the problem that-shall-not-be-named.

the modern peer

What’s in an “academic” name?