All, I am proud to announce that the 1.6 release for BioPerl-run, BioPerl- db, and BioPerl-network are now available by direct download and via CPAN. These are designated as 1.006000, with a requirement for BioPerl 1.6 and higher (1.006000). FIXED: Bio::Tools::Run::Primer3 now accepts primer3 or primer3_core as executable names Bio::Tools::Run::Vista tests now pass if Vista.jar is installed.
Please forward as appropriate and forgive multiple postings.
Google is committed to run the Summer of Code program again this year. It will be for the 5th time. In broad strokes, the program funds what you might call remote summer internships for students to contribute to an open-source software project.
O|B|F News feed is now available in Twitter! You are welcome to follow us. Cheers, The O|B|F Admins.
Release Pumpkin Chris Fields has announced the release of BioPerl 1.6 - the first stable release in a several years containing many significant improvements and bug fixes.
RC4 is up, we are days away from final release…
Belated, and probably most of you knew already, but just in case you didn’t, the 2009 Bioinformatics Open Source Conference (BOSC) was accepted on Dec 16 as a Special Interest Group (SIG) meeting by the respective ISMB 2009 review committee. Special thanks and congratulations to Kam Dahlquist, who agreed again this year to chair the conference, and who pulled the proposal together.
The minutes of the November 2008 O|B|F Board of Directors meeting have been posted. The most important result of that meeting is that Kam Dahlquist was elected to the Board, bringing the number of Board members back to four. Please join us in extending a warm welcome to Kam! We aim to elect additional Directors this year, please contact the Nominating Committee if you are interested in serving, or if you know people who might be.
BioPerl has branched for 1.6 and the RC1 is up for testing as Chris announced.
BioPerl is preparing for version 1.6 release in the coming months. As part of this some restructuring and simplification of the packaging is occurring. Bio-Graphics has been split off into its own package back on Sourceforge to allow for a separate release schedule. It will be uploaded to CPAN as a separate package. In the future other small groups of modules will also be split off from the Core.
We are pleased to announce the release of Biopython 1.49. There have been some significant changes since Biopython 1.48 was released a few months ago, which is why we initially released a beta for wider testing. Thank you to all those who tried this and reported the minor problems uncovered.