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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Software Peer ReviewPackagesMapscannerSpatialMapsCiências da Computação e da InformaçãoInglês
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🔗mapscanner It is sometimes easy in the midst of the cutting-edge world of uniquesoftware development that is rOpenSci to forget that even though oursoftware might be freely available from anywhere in the world, access toadequate hardware is often restricted.

Software Peer ReviewPackagesPhylogeneticsComparativeBiologyCiências da Computação e da InformaçãoInglês
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Autores April Wright, Cristian Román-Palacios, Josef Uyeda

The data.table package enables high-performance extended functionality for data tables in R. treedata.table is a wrapperfor data.table for phylogenetic analyses that matches a phylogeny to the data.table, and preserves matching during data.table operations.Using the data.table package greatly increases analysis reproducibility and the efficiency of data manipulation operations over other ways of performing similar tasks inbase R, enabling

TaxonomyScientificGolangNamextRgnparserCiências da Computação e da InformaçãoInglês
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Autor Scott Chamberlain

I’m starting to tackle a few hard packages (spplit and spenv) having to do with integrating disparate data sources. I’ll talk here about spplit. I haven’t worked on spplit in a few years; I thought I’d make another attempt with “fresh” eyes. There are many use cases I can imagine for spplit; I’ll highlight a few.

Software Peer ReviewPackagesCommunityTestingDatabasesCiências da Computação e da InformaçãoInglês
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Autor Jonathan Keane

This post describes a few different aspects behind the scenes of the development of dittodb which recently went through the rOpenSci peer review process and was released to CRAN on 24 July 2020.This isn’t an introduction to the package itself (that’s available on dittodb’s site), but rather a look behind the scenes of the conceiving of the idea, the inspiration for, some of the development of, and history behind dittodb.

Open-scienceReproducible-researchData-accessDatasharingOsfCiências da Computação e da InformaçãoInglês
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osfr provides a ( hopefully ) convenient R interface to OSF (Open Science Framework, https://www.osf.io), a free service for managing research developed by the Center for Open Science (COS). osfr completed its rOpenSci peer-review earlier this year and has been available on CRAN since February.

APISoftware DevelopmentHugoTech NotesCiências da Computação e da InformaçãoInglês
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Autores Scott Chamberlain, Maëlle Salmon

In October last year we wrote about the CRAN Checks API (https://cranchecks.info). Since then there have been four new major items introduced: documentation, notifications, search, and a new version of the cchecks R package. First, an introduction to the API for those not familiar.

AccessibilityCommunityCommunity-callVideoCiências da Computação e da InformaçãoInglês
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Webinars and community calls are a great way to gather many people to discuss a specific topic, without the logistic hurdles of in-person events. But whether online or in-person, to reach the broadest audience, all events should work towards greater accessibility.

Community CallPackagesMaintenanceQualtricsCranCiências da Computação e da InformaçãoInglês
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In March we held a Community Call discussing the maintenance of R packages.This call included a starting presentation by Julia Silge followed by a discussion featuring panelists with a wide variety of backgrounds: Elin Waring, Erin Grand, Leonardo Collado-Torres and Scott Chamberlain.

PackageGertCredentialsGitGithubCiências da Computação e da InformaçãoInglês
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We have been working hard behind the scenes on the upcoming release of our new git package named gert, a joint effort from rOpenSci and the Tidyverse team. One of the main features of gert is the out-of-the-box authentication mechanism, which is provided via the new credentials package.

NewsletterHugoAukBib2dfBomrangCiências da Computação e da InformaçãoInglês
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🔗rOpenSci HQ The rOpenSci team, together with ten expert community members, put together a post: When Field or Lab Work is not an Option - Leveraging Open Data Resources for Remote Research. We highlighted examples of how specific collections of packages are being used right now in fields as varied as archaeology and climate science and compiled a table of > 100 rOpenSci packages for access to open data.