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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Interesting ChemistryCambridgeSteve BachrachQuímicaInglês
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Here is a challenge: what is the longest C-C bond actually determined (in which both carbon termini are sp 3 hybridised)? I pose this question since Steve Bachrach has posted on how to stabilize long bonds by attractive dispersive interactions, and more recently commenting on what the longest straight chain alkane might be before dispersive interaction start to fold it (the answer appears to be C 17 ). A search of the

Derek BartonHistoricalR. C. CooksonQuímicaInglês
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All organic chemists are familiar with the stereochemical notation for bonds, as shown below. But I had difficulty tracking down when it was introduced, and by whom. I offer a suggestion here, but if anyone reading this blog has got a better/earlier attribution, please let us know!

Potential Energy SurfacesReaction MechanismTutorial MaterialQuímicaInglês
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An obvious issue to follow-up my last post on the (solvated) intrinisic reaction coordinate for the Sn2 reaction is how variation of the halogen (X) impacts upon the nature of the potential.

Interesting ChemistryMatthias BickelhauptPotential Energy SurfaceReaction MechanismQuímicaInglês
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It was three years ago that I first blogged on the topic of the Sn2 reaction. Matthias Bickelhaupt had suggested that the Sn2 reaction involving displacement at a carbon atom was an anomaly; the true behaviour was in fact exhibited by the next element down in the series, silicon.

Chemical ITOpendataSkolnikQuímicaInglês
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A third digital repository has been added to the two I described before. Chempound is a free open-source repository which (unlike DSpace and Figshare) was developed specifically for chemistry. It carries more semantic information (in the form of an RDF triple declaration), which allows SPARQL queries on the entry to be performed.

Reaction MechanismTutorial MaterialWittig ReactionQuímicaInglês
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This is another of those textbook reactions, involving reaction of a carbonyl compound with a phosphonium ylid to form an alkene and a phosphine oxide. The reaction continues to be frequently used, in part because it can be highly stereospecific.  Thus the standard version tends to give Z -alkenes with good specificity, and is thought to proceed via an oxaphosphatane 4-ring intermediate.

EliminationMigrationPericyclicReaction MechanismTutorial MaterialQuímicaInglês
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The Curtius reaction is represented in most chemistry texts and notes as following path (a) below. It is one of a general class of thermally induced rearrangement which might be described as elimination/migration (in a sense similar to this ring contraction migration/elimination), in this case implicating a nitrene intermediate if the two steps occur consecutively.

Curly ArrowsDeficiencyIntrinsic Reaction CoordinateReaction MechanismTutorial MaterialQuímicaInglês
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Two years ago, I discussed how curly arrow pushing is taught, presenting four different ways of showing the arrows. One of the comments posted to that blog suggested that all of the schemes shown below were deficient in one aspect. Curly arrow pushing The issues were the stereo and regiochemistry. In particular, the diagram above carries no explicit information about the symmetry of the electrons from which the first arrow originates;

Dimer ProductIPadPericyclicPostscriptPotential Energy SurfaceQuímicaInglês
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organic chemistry. It does not look like much, but this small little molecule brought us ferrocene, fluxional NMR, aromatic anions and valley-ridge inflexion points. You might not have heard of this last one, but in fact I mentioned the phenomenon in my post on nitrosobenzene. As for being at a crossroads, more like a Y-junction. Let me explain why.

Curly ArrowsInteresting ChemistryFree Energy Activation BarrierHistoricalΣ/π OrthogonalityQuímicaInglês
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Recollect, Robinson was trying to explain why the nitroso group appears to be an o/p director of aromatic electrophilic substitution. Using σ/π orthogonality, I suggested that the (first ever) curly arrows as he drew them could not be the complete story, and that a transition state analysis would be needed. Here it is.  Let me set the scene on how this might be done.