Biyolojik BilimlerİngilizceBlogger

Getting Genetics Done

Getting Things Done in Genetics & Bioinformatics Research
Ana Sayfa
language
RBiyolojik Bilimlerİngilizce
Yayınlandı

Reposted from the original at: https://blog.stephenturner.us/p/tidy-rag-in-r-with-ragnar Retrieval augmented generation in R using the ragnar package. Demonstration: scraping text from relevant links on a website and using RAG to ask about a university's grant funding.

RBiyolojik Bilimlerİngilizce
Yayınlandı

Reposted from the original at https://blog.stephenturner.us/p/quarto-books. ...In the spirit of learning in public, I wanted an excuse to dive into Quarto to learn more about publishing formats beyond simple PDF and HTML documents.If you’re not familiar, Quarto (quarto.org) is the successor to RMarkdown, the next-generation scientific publishing system that works natively with Python, R, and OJS.

RBiyolojik Bilimlerİngilizce
Yayınlandı

Reposted from the original at https://blog.stephenturner.us/p/r-450-bioconductor-321. Faster package installation, import only the functions you want with use(), built-in Palmer penguins data, grep values shortcut, and lots of new bioinformatics packages in Bioconductor ... R 4.5.0 was released last week, and Bioconductor 3.21 came a few days later.

RBiyolojik Bilimlerİngilizce
Yayınlandı

Reposted from the original at https://blog.stephenturner.us/p/github-repo-to-text-for-llm-input. ---  If you use ChatGPT, Claude, or even some local model through Ollama or HuggingFace Assistants, you’ll know that the chat interface makes it challenging to feed in an entire repo like a Python or R package, because functions, tests, etc. can be scattered across many files throughout a repo.

RBiyolojik Bilimlerİngilizce
Yayınlandı

Reposted from https://blog.stephenturner.us/p/tech-im-thankful-for-2024 Data science and bioinformatics tech I'm thankful for in 2024: tidyverse, RStudio, Positron, Bluesky, blogs, Quarto, bioRxiv, LLMs for code, Ollama, Seqera Containers, StackOverflow, ...It’s a short week here in the US. As I reflect on the tools that shape modern bioinformatics and data science it’s striking to see how far we’ve come in the 20 years I’ve

RBiyolojik Bilimlerİngilizce
Yayınlandı

This is reposted from the original at https://blog.stephenturner.us/p/expand-your-bluesky-network-with-r. ---I’m encouraging everyone I know online to join the scientific community on Bluesky.Bluesky for Science Stephen Turner·Nov 16Read full storyIn that post I link to several starter packs — lists of accounts posting about a topic that you can follow individually or all at once to start filling out your network.I started