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Getting Genetics Done

Getting Things Done in Genetics & Bioinformatics Research
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NewsNoteworthy BlogsStatisticsBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

Google's chief economist was recently quoted as saying "The sexy job in the next ten years will be statisticians… The ability to take data-to be able to understand it, to process it, to extract value from it, to visualize it, to communicate it-that’s going to be a hugely important skill." I'll leave you for the weekend with this ego-boosting article relating how our skill set as statisticians is a hot commodity in the real world.Dataspora Blog:

AnnouncementsJournal ClubBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

The Program in Computational Genomics holds a journal club twice a month. Our technical writer Julia Wall will soon start posting here references to the articles we talked about. Keep an eye out here to see some of the latest research we're discussing!Getting Genetics Done by Stephen Turner is licensed under a Creative Commons Attribution (CC BY) License.

AnnouncementsBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

In case you missed the email, Lana Olson here in the CHGR is holding a workshop next Thursday, June 4 at 1:30pm on using Haploview, WASP, PLINK, and STRUCTURE. The workshop will be held in the CHGR conference room, 519 Light Hall.Getting Genetics Done by Stephen Turner is licensed under a Creative Commons Attribution (CC BY) License.

AnnouncementsRTutorialsBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

The Vanderbilt Kennedy Center is offering a free (repeat, free) one-day introductory course to the R statistical computing language on June 23, taught by Theresa Scott from the department of Biostatistics. You can find contact/registration info at the link below.Vanderbilt Kennedy Center - An Introduction to the Fundamentals &

AnnouncementsBioinformaticsStatisticsWeb AppsBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

Has anyone ever used Galaxy? I saw their presentation at last year's ASHG. Seems like a great way to do collaborate on and keep a record of analyses in an easy web-GUI interface without having to download any software.

BioinformaticsPubMedBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

So you have found significant SNPs from a study, and you are investigating the region. Browsing through Ensembl or Entrez-Gene, you find a coding region nearby. Atop this coding region, you see a collection of letters that are commonly used to refer to this gene, lets say "MYLK". So you begin a PubMed search to find publications that describe the function of this gene, searching with "MYLK". Seems reasonable, right?Beware!

BioinformaticsSearchWeb AppsBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

Just released last week by the makers of Mathematica, Wolfram Alpha is kind of like a search engine, calling itself a "computational knowledge engine," with the lofty goal as a "long-term project to make all systematic knowledge immediately computable by anyone."From their homepage you can link to a page showing examples of how to use it, but I was interested in seeing how much biology Wolfram Alpha knows, and I've got to say I'm impressed with

LinuxBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

Ever find yourself trying to remember a series of steps you recently did in Linux? Try typing the command "history" at the command line (without the quotes). You'll see a long list of your most recently used commands.

Biyolojik Bilimlerİngilizce
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Yazar Stephen Turner

For those of you writing abstracts that will get you to Hawaii this fall for IGES (due June 1) and ASHG (due June 2), just follow this template from Piled Higher and Deeper.Getting Genetics Done by Stephen Turner is licensed under a Creative Commons Attribution (CC BY) License.

Recommended ReadingStatisticsBiyolojik Bilimlerİngilizce
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Yazar Stephen Turner

Nature Reviews Genetics just published an excellent paper on interaction analysis by Heather Cordell. This masterfully written review starts by defining interaction, then delving into strategies to statistically model it in human genetics studies.