Zhiam Kamvar is Lesson Infrastructure Technology Developer at The Carpentries (Software Carpentry, Data Carpentry & Library Carpentry), an open global community teaching the skills &

rOpenSci Software Peer Review’s guidance is gathered in an online book that keeps improving!This blog post summarises what’s new in our Dev Guide 0.8.0, with all changes listed in the changelog. 🔗Farewell Stefanie Butland After many years of fabulous contributions to the rOpenSci community, Stefanie Butland left the role of community manager at the start of 2022.

Anyone can contribute a software package to the rOpenSci suite as long as it fits our scope (research lifecycle software and statistical software) for a transparent, constructive, nonadversarial and open review.

Dear rOpenSci friends, it’s time for our monthly news roundup! You can read this post on our blog. Now let’s dive into the activity at and around rOpenSci! 🔗rOpenSci HQ 🔗R-universe prominently displays more information on packages!

Following our recent post on “Safeguards and Backups for GitHub Organizations”, nearly one month ago we went one step further and made two-factor authentication (2FA) required for all members and outside collaborators of our main organization, ropensci.It was a timely decision as GitHub since then announced it will require all users who contribute code on GitHub.com to enable one or more forms of two-factor authentication (2FA) by the end of

Did you know that GitHub lets you refer to the default branch of any repository by substituting the branch name with HEAD in the url? This is a very useful trick to write robust code that works regardless of whether the default branch is called main or master, and will keep working when the default branch gets renamed at some point.

Dear rOpenSci friends, it’s time for our monthly news roundup! You can read this post on our blog.Now let’s dive into the activity at and around rOpenSci!

rOpenSci Software Peer Review and Statistical Software Peer Review rely on the volunteer work of reviewers, and editors.Editors manage the day-to-day flow of submissions, recruit reviewers and guide the peer-review process from start to finish.

🔗TL;DR rsnps is a package that enables the retrieval of single nucleotide polymorphism (SNP) data from the NCBI’s dbSNP database and openSNP by providing wrappers for the APIs. Single nucleotide polymorphisms represent differences at one specific position in a detected biological sequence compared to the reference. ncbi_snp_query() now returns all reported variant allele frequencies in dbSNP in column maf_population in form of a tibble.

🔗R-universe now has search! We made a series of structural improvements in r-universe to make it easier to browse and discover interesting R packages and articles. Most notably, the r-universe.dev landing page has been overhauled: you can now search directly for any name or keyword across the entire ecosystem: The homepage also lists the popular topics and organizations, and links to recently active packages, articles, and maintainers.

At rOpenSci, much of our code, content and infrastructure is hosted on GitHub over several organizations – described on our resources page.This post summarizes some steps we’ve taken to safeguard our GitHub organizations. 🔗Paying attention to access rights &