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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Bond SlamHypervalencyAntibonding Molecular OrbitalAtomic OrbitalBlockKimya Bilimleriİngilizce
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Hypervalency is defined as a molecule that contains one or more main group elements formally bearing more than eight  electrons in their  valence shell. One example of a molecule so characterised was CLi 6 [cite]10.1038/355432a0[/cite] where the description "“ carbon can expand its octet of electrons to form this relatively stable molecule ” was used.

Crystal_structure_miningHistoricalA Jahn-TellerBond LengthChemical ConceptsKimya Bilimleriİngilizce
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The phenomenon of bond stretch isomerism , two isomers of a compound differing predominantly in just one bond length, is one of those chemical concepts that wax and occasionally wane.[cite]10.1016/S1631-0748(02)01380-2[/cite] Here I explore such isomerism for the elements Ge, Sn and Pb. In one earlier post, I noted a form of bond stretch isomerism that can arise from a Jahn-Teller distortion ending in two different geometries

Chemical ITAcademic PublishingEuropean UnionFirst Open ScientistFirst SecretaryKimya Bilimleriİngilizce
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I attended the first (of a proposed five) workshops organised by LEARN (an EU-funded project that aims to .. .Raise awareness in research data management (RDM) issues & research policy ) on Friday. Here I give some quick bullet points relating to things that caught my attention and or interest. The program (and Twitter feed) can be found at https://learnrdm.wordpress.com where other's comments can also be seen.

GeneralInteresting ChemistryChemical BondChemical BondingElectronKimya Bilimleriİngilizce
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Six years ago, I posted on the nature of a then recently reported[cite]10.1002/anie.200803859[/cite] Cr-Cr quintuple bond. The topic resurfaced as part of the discussion on a more recent post on NSF 3 , and a sub-topic on the nature of the higher order bonding in C 2 . The comment made a connection between that discussion and the Cr-Cr bond alluded to above.

Reaction MechanismAqueous SolutionBrian ChallisCan construct Quantum-chemical modelsComputed Free Energy Barrier MatchesKimya Bilimleriİngilizce
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The original strategic objective of my PhD researches in 1972-74 was to explore how primary kinetic hydrogen isotope effects might be influenced by the underlying structures of the transition states involved. Earlier posts dealt with how one can construct quantum-chemical models of these transition states that fit the known properties of the reactions.

HypervalencyChemical BondChemical BondingElectronLone PairKimya Bilimleriİngilizce
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The post on applying VSEPR ("valence shell electron pair repulsion") theory to the geometry of ClF 3 has proved perennially popular. So here is a follow-up on another little molecue, F 3 SN. As the name implies, it is often represented with an S≡N bond. Here I take a look at the conventional analysis. This is as follows: Six valence electrons on the central S atom.

Interesting ChemistryAcidAcidsBicyclic NetworkCarboxylic AcidKimya Bilimleriİngilizce
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Earlier I explored models for the heteroaromatic electrophilic protiodecarboxylation of an 3-substituted indole, focusing on the role of water as the proton transfer and delivery agent. Next, came models for both water and the general base catalysed ionization of indolinones.

HistoricalReaction MechanismArenium IonBasesDiazoKimya Bilimleriİngilizce
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This is the third and final study deriving from my Ph.D.[cite]10.1039/P29750001822[/cite]. The first two topics dealt with the mechanism of heteroaromatic electrophilic attack using either a diazonium cation or a proton as electrophile, followed by either proton abstraction or carbon dioxide loss from the resulting Wheland intermediate.

Chemical ITKimya Bilimleriİngilizce
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In May 2015, the EPSRC funding council in the UK required researchers to publish the outcomes of the funded work to include an OA (open access) version of the narrative and to cite the managed research data used to support the research with a DOI (digital object identifier). I was discussing these aspects with a senior manager (research outcomes) at the EPSRC and he asked me to provide some examples from my area of chemistry;