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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Interesting ChemistryDielectricEnergyEquilibrium ChemistryFluoridesKimya Bilimleriİngilizce
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The autoionization of water involves two molecules transfering a proton to give hydronium hydroxide, a process for which the free energy of reaction is well known. Here I ask what might happen with the next element along in the periodic table, F. I have been unable to find much about the autoionization of HF in the literature;

Interesting ChemistryDielectricEnergyFree EnergyHeat TransferKimya Bilimleriİngilizce
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Earlier, I constructed a possible model of hydronium hydroxide, or H 3 O + .OH^– ^One way of assessing the quality of the model is to calculate the free energy difference between it and two normal water molecules and compare the result to the measured difference. Here I apply a further test of the model using isotopes.

Chemical IT10.17616Academic PublishingDataCiteEnergy Profile DiagramsKimya Bilimleriİngilizce
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I want to describe a recent attempt by a group of collaborators to share the research data associated with their just published article.[cite]10.1021/jacs.5b13070[/cite] I am here introducing things in a hierarchical form (i.e. not necessarily the serial order in which actions were taken). The data repository selected for the data sharing is described by (m3data) doi: 10.17616/R3K64N[cite]10.17616/R3K64N[/cite] A collaborative

Chemical ITAcademic PublishingAutomated Software AnalysisBASEChemical ContextKimya Bilimleriİngilizce
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Scientists are familiar with the term data, at least in a scientific or chemical context, but appreciating metadata (meaning "after", or "beyond") is slightly more subtle, in the sense of using it to mean data about data. The challenge lies in clarifying where the boundary between data and its metadata lies and in specifying and controlling the vocabulary used for these metadata descriptions.

GeneralInteresting ChemistryAmmoniaAnionsFree EnergyKimya Bilimleriİngilizce
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If H 3 N + -O is viable compared with its tautomer H 2 N-OH when carrying water bridges, then why not try H 2 O + -O vs HO-OH? There are no examples to be found in crystal structures! The solvated structure of H 2 O + -O is modified directly from that of H 3 N + -O and

GeneralInteresting ChemistryAmmoniaAqueous SolutionsBasesKimya Bilimleriİngilizce
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In the previous post I described how hydronium hydroxide or H 3 O + …HO , an intermolecular tautomer of water, has recently been observed captured inside an organic cage[cite]10.1002/chem.201406383[/cite] and how the free-standing species in water can be captured computationally with the help of solvating water bridges.

Chemical ITAcademic PublishingEmbargoOpen AccessPublishingKimya Bilimleriİngilizce
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Publishing embargoes seem a relatively new phenomenon, probably starting in areas of science when the data produced for a scientific article was considered more valuable than the narrative of that article. However, the concept of the embargo seems to be spreading to cover other aspects of publishing, and I came across one recently which appears to take such embargoes into new and uncharted territory.

Chemical ITCrystal_structure_miningInteresting ChemistryCentroidChemical EffectKimya Bilimleriİngilizce
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A celebration of the life and work of the great chemist Paul von R. Schleyer was held this week in Erlangen, Germany. There were many fantastic talks given by some great chemists describing fascinating chemistry. Here I highlight the presentation given by Andy Streitwieser on the topic of organolithium chemistry, also a great interest of Schleyer's over the years.

Chemical ITGeneralAugmented RealityChemical ArticleCompany: MicrosoftKimya Bilimleriİngilizce
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Augmented reality, a superset if you like of virtual reality (VR), has really been hitting the headlines recently. Like 3D TV, its been a long time coming! Since ~1994 or earlier, there have been explorations of how molecular models can be transferred from actual reality to virtual reality using conventional computers (as opposed to highly specialised ones). It was around then that a combination of software (Rasmol) and