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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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CambridgeIsomeric ProductsReaction MechanismSimulationKimya Bilimleriİngilizce
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In the preceding post, I described a fascinating experiment and calculation by Bogle and Singleton, in which the trajectory distribution of molecules emerging from a single transition state was used to rationalise the formation of two isomeric products 2 and 3.  In the present post, I explore possible consequences of including a sodium cation (X=Na+ below) in […]

Interesting ChemistryReaction MechanismCambridgeChemistConformational AnalysisKimya Bilimleriİngilizce
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Years ago, I was travelling from Cambridge to London on a train. I found myself sitting next to a chemist, and (as chemists do), he scribbled the following on a piece of paper. When I got to work the next day Vera (my student) was unleashed on the problem, and our thoughts were published.

Chemical ITInteresting ChemistryHistoricalMPEGPeter SchreinerKimya Bilimleriİngilizce
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Back in 1994, we published the crystal structure of the molecule below (X=H), a putative anti-malarial drug called halofantrine. Little did we realise that a whole area of organo catalysis based on a thiourea catalyst with a similar motif would emerge a little later. Here is how the two are connected.

Baldwins RulesFree EnergyHydrogen Bond NetworkImmediate ProductReaction MechanismKimya Bilimleriİngilizce
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This is a continuation of the previous post exploring the transition state geometries of various types of ring closure as predicted by  Baldwin’s rules. I had dealt with bond formation to a trigonal (sp2) carbon; now I add a digonal (sp) example (see an interesting literature variation).

GeneralBaldwins RulesFree Energy BarrierImmediate ProductPotential Energy SurfaceKimya Bilimleriİngilizce
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The Baldwin rules for ring closure follow the earlier ones by Bürgi and Dunitz in stating the preferred angles of nucleophilic (and electrophilic) attack in bond forming reactions, and are as famous for the interest in their exceptions as for their adherence.

Interesting ChemistryAlbert SchatzCandidate For Its FormulaHistoricalLaboratory Of Selman WaksmanKimya Bilimleriİngilizce
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Streptomycin is an antibiotic active against tuberculosis, and its discovery has become something of a cause célèbre. It was first isolated on October 19, 1943 by a graduate student Albert Schatz in the laboratory of Selman Waksman at Rutgers University. I want to concentrate in this post on its molecular structure.

Acetic AcidReaction MechanismTutorial MaterialKimya Bilimleriİngilizce
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If you have not previously visited, take a look at Nick Greeves’ ChemTube3D , an ever-expanding gallery of reactions and their mechanisms. The 3D is because all molecules are offered with X, Y and z coordinates. You also get arrow pushing‡ in 3D. Here, I argue that we should adopt Einstein, and go to the space-time continuum!