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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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CommunitySoftwareSoftware Peer ReviewRrricanesRrricanesdataInformática y Ciencias de la InformaciónInglés
Publicado
Autor Tim Trice

What is rrricanes Why Write rrricanes? There is a tremendous amount of weather data available on the internet. Much of it is in raw format and not very easy to obtain. Hurricane data is no different. When one thinks of this data they may be inclined to think it is a bunch of map coordinates with some wind values and not much else. A deeper look will reveal structural and forecast data.

PatentsPatentsViewPackagesAPIUSPTOInformática y Ciencias de la InformaciónInglés
Publicado
Autor Chris Baker

Why care about patents? 1. Patents play a critical role in incentivizing innovation, withoutwhich we wouldn’t have much of the technology we rely on everyday What does your iPhone, Google’s PageRank algorithm, and a buttersubstitute called Smart Balance all have in common? …They all probably wouldn’t be here if not for patents.

SoftwareSoftware Peer ReviewInformática y Ciencias de la InformaciónInglés
Publicado
Autores Scott Chamberlain, Maëlle Salmon, Noam Ross, Karthik Ram

The R package ecosystem now contains more than 10K packages, and several flagship packages belong under the rOpenSci suite. Some of these are: magick for image manipulation, plotly for interactive plots, and git2r for interacting with git. rOpenSci is a community of people making software to facilitate open and reproducible science/research.

SoftwareSoftware Peer ReviewReviewerInformática y Ciencias de la InformaciónInglés
Publicado
Autor Verena Haunschmid

It all started January 26 th this year when I signed up to volunteer asa reviewer for R packages submitted to rOpenSci. My main motivation forwanting to volunteer was to learn something new and tocontribute to the R open source community. If you are wondering why thepeople behind rOpenSci are doing this, you can read How rOpenSci uses Code Review to Promote Reproducible Science.

PackagesSoftwareExcelXlsxTech NotesInformática y Ciencias de la InformaciónInglés
Publicado
Autor Jeroen Ooms

We have started working on a new rOpenSci package called writexl. This package wraps the very powerful libxlsxwriter library which allows for exporting data to Microsoft Excel format. The major benefit of writexl over other packages is that it is completely written in C and has absolutely zero dependencies. No Java, Perl or Rtools are required. Getting Started The write_xlsx function writes a data frame to an xlsx file.

PackagesSoftwareSpellingTextTech NotesInformática y Ciencias de la InformaciónInglés
Publicado
Autor Jeroen Ooms

The new rOpenSci spelling package provides utilities for spell checking common document formats including latex, markdown, manual pages, and DESCRIPTION files. It also includes tools especially for package authors to automate spell checking of R documentation and vignettes. Spell Checking Packages The main purpose of this package is to quickly find spelling errors in R packages.

SoftwareSoftware Peer ReviewCommunityInformática y Ciencias de la InformaciónInglés
Publicado
Autores Noam Ross, Scott Chamberlain, Karthik Ram, Maëlle Salmon

At rOpenSci, we create and curate software to help scientists with the data life cycle. These tools access, download, manage, and archive scientific data in open, reproducible ways. Early on, we realized this could only be a community effort. The variety of scientific data and workflows could only be tackled by drawing on contributions of scientists with field-specific expertise. With the community approach came challenges.

CommunityCommunity CallEventsSoftware Peer ReviewInformática y Ciencias de la InformaciónInglés
Publicado
Autor Stefanie Butland

Are you thinking about submitting a package to rOpenSci’s open peer software review? Considering volunteering to review for the first time? Maybe you’re an experienced package author or reviewer and have ideas about how we can improve. Join our Community Call on Wednesday, September 13th . We want to get your feedback and we’d love to answer your questions!

CommunitySoftwareSoftware Peer ReviewHardwareRopenaqInformática y Ciencias de la InformaciónInglés
Publicado
Autor Maëlle Salmon

As you might remember from my blog post about ropenaq, I work as a data manager and statistician for an epidemiology project called CHAI for Cardio-vascular health effects of air pollution in Telangana, India. One of our interests in CHAI is determining exposure, and sources of exposure, to PM2.5 which are very small particles in the air that have diverse adverse health effects.

Data AccessPackagesSpatialGeospatialSoftware Peer ReviewInformática y Ciencias de la InformaciónInglés
Publicado
Autor Kyle Bocinsky

The package FedData has gone through software review and is now part of rOpenSci. FedData includes functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package enables extraction from six datasets: The National Elevation Dataset (NED) digital elevation models (1 and 1/3 arc-second;

SoftwarePackagesSoftware Peer ReviewCommunityVisdatInformática y Ciencias de la InformaciónInglés
Publicado
Autor Nicholas Tierney

This is a phrase that comes up when you first get a dataset. It is also ambiguous. Does it mean to do some exploratory modelling? Or make some histograms, scatterplots, and boxplots? Is it both? Starting down either path, you often encounter the non-trivial growing pains of working with a new dataset.