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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Crystal_structure_miningHistoricalInteresting ChemistryPericyclicCiencias QuímicasInglés
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The quote of the post title comes from R. B. Woodward explaining the genesis of the discovery of what are now known as the Woodward-Hoffmann rules for pericyclic reactions.[cite]10.1021/ja01080a054[/cite] I first wrote about this in 2012, noting that “ for (that) blog, I do not want to investigate the transition states”. Here I take a closer look at this aspect.

Interesting ChemistryCiencias QuímicasInglés
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In the previous post, I showed the geometries of three large cyclic porphyrins, as part of an article[cite]10.1038/s41557-019-0398-3[/cite] on exploring the aromaticity of large 4n+2 cyclic rings. One of them had been induced into a “figure-eight” or lemniscular conformation, as shown below.

Interesting ChemistryCiencias QuímicasInglés
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Here is another of the “large” molecules in the c&e news shortlist for molecule-of-the-year, 2020. This one is testing the Hückel 4n+2 rule out to a value never before seen (n = 40, or 162 π-electrons).[cite]10.1038/s41557-019-0398-3[/cite] The take-home message is that this rule seems to behave well in predicting global aromaticity even at this sort of scale!

Interesting ChemistryCiencias QuímicasInglés
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The title derives from an article[cite]10.1038/s41586-020-2614-0[/cite] which was shortlisted for the annual c&en molecule of the year 2020 awards (and which I occasionally cover here). In fact this year’s overall theme is certainly large molecules, the one exception being a smaller molecule with a quadruple bond to boron, a theme I have already covered here.

Reaction MechanismCiencias QuímicasInglés
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I asked the question in my previous post. A computational mechanism revealed that AlCl 3 or its dimer Al 2 Cl 6 could catalyse a concerted 1,1-substitution reaction at the carbon of Cl-C≡N, with benzene displacing chloride which is in turn captured by the Al. Unfortunately the calculated barrier for this simple process was too high for a reaction apparently occuring at ~room temperatures.

Reaction MechanismCiencias QuímicasInglés
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In 2010 I recounted the story of an organic chemistry tutorial, in which I asked the students the question “ how would you synthesize 3-nitrobenzonitrile “. The expected answer was to generate a nitronium ion to nitrate benzonitrile, but can one invert this by generating a C⩸N + ion to cyanate nitrobenzene?

Interesting ChemistryCiencias QuímicasInglés
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Cyclopropenylidene must be the smallest molecule to be aromatic due to π-electrons, with just three carbon atoms and two hydrogen atoms. It has now been detected in the atmosphere of Titan, one of Saturn’s moons[cite]10.3847/1538-3881/abb679[/cite] and joins benzene, another aromatic molecule together with the protonated version of cyclopropenylidene, C 3 H 3 + also found there.

Interesting ChemistryCiencias QuímicasInglés
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Way back in 2010, I was writing about an experience I had just had during an organic chemistry tutorial, which morphed into speculation as to whether a carbon atom might sustain a quadruple bond to nitrogen. A decade on, and possibly approaching 100 articles by many authors on the topic, quadruple bonds to carbon continue to fascinate.

HistoricalCiencias QuímicasInglés
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In Internet terms, 23 years ago is verging on pre-history. Much of what was happening around 1997 on the Web was still highly experimental and so its worth taking a look at some of this to see how it has survived or whether it can be “curated” into a form that would still be useful.