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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Chemical ITActive SiteBill GatesCity: ReykjavikCountry: IcelandCiencias QuímicasInglés
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This is sent from the Pidapalooza event in Reykjavik, Iceland, and is a short collection of notable things I learnt or which attracted my attention. Firstly, what IS PIDapalooza [cite]10.5438/11.0001[/cite]? Well, it’s all about persistent identifiers, but don’t let that put you off! Another way of putting it is that it’s a way of finding things scientific on the Web.

Crystal_structure_miningInteresting ChemistryAngleMetalSubtended AngleCiencias QuímicasInglés
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I am now inverting the previous question by asking what is the largest angle subtended at a chain of three connected 4-coordinate carbon atoms ? Let’s see if further interesting chemistry can be unearthed. Specifying only angles > 130°, the following distribution is obtained.

Crystal_structure_miningReaction MechanismAnimationBicyclic MoleculeChemical RecordCiencias QuímicasInglés
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Is asking a question such as “what is the smallest angle subtended at a chain of three connected 4-coordinate carbon atoms” just seeking another chemical record, or could it unearth interesting chemistry?

Chemical ITCrystal_structure_miningCiencias QuímicasInglés
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After sixty years of searching, the first non-templated double helical carbon-free inorganic molecular structure has been reported.[cite]10.1002/adma.201603135[/cite] That is so neat that I thought to load the 3D coordinates here for you to interact with and then to explore the prospect of using these coordinates to add some value with e.g. some chiroptical calculations.

Crystal_structure_miningCiencias QuímicasInglés
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Chemists are as fond of records as any, although I doubt you will find many chemical ones in the Guinness world records list. Polytriangulanes chase how many cyclopropyl 3-rings can be joined via a vertex.

Bradley-Mason Prize For Open ChemistryAnalytical ChemistryChemical InformationChemical InsightCheminformaticsCiencias QuímicasInglés
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Peter Murray-Rust and I are delighted to announce that the 2016 award of the Bradley-Mason prize for open chemistry goes to Jan Szopinski (UG) and Clyde Fare (PG). Jan’s open chemistry derives from a final year project looking at why atom charges derived from quantum chemical calculation of the electronic density represent chemical information well, but the electrostatic potential (ESP) generated from these charges is very

Reaction MechanismAddition ProductFree-energy PathwayFunctional GroupsImineCiencias QuímicasInglés
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The story so far. Imines react with a peracid to form either a nitrone (σ-nucleophile) or an oxaziridine (π-nucleophile).[cite]10.1016/S0040-4039(00)98582-4[/cite] The balance between the two is on an experimental knife-edge, being strongly influenced by substituents on the imine.

Interesting ChemistryAminesArtemisininChemistryFunctional GroupsCiencias QuímicasInglés
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Compounds with O-O bonds often have weird properties. For example, artemisinin, which has some fascinating stereoelectronics. Here is another such, recently in the news and known as HMTD (hexamethylene triperoxide diamine). The crystal structure was reported some time ago[cite]10.1021/jp0123841[/cite] and the article included an inspection of the computed wavefunction.

Crystal_structure_miningReaction MechanismCiencias QuímicasInglés
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Nucleophiles are species that seek to react with an electron deficient centre by donating a lone or a π-bond pair of electrons. The ambident variety has two or more such possible sources in the same molecule, an example of which might be hydroxylamine or H 2 NOH.