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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Crystal_structure_miningInteresting ChemistryAngleMetalSubtended AngleCiencias QuímicasInglés
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I am now inverting the previous question by asking what is the largest angle subtended at a chain of three connected 4-coordinate carbon atoms? Let’s see if further interesting chemistry can be unearthed.

Crystal_structure_miningReaction MechanismAnimationBicyclic MoleculeChemical RecordCiencias QuímicasInglés
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Is asking a question such as “what is the smallest angle subtended at a chain of three connected 4-coordinate carbon atoms” just seeking another chemical record, or could it unearth interesting chemistry?

Chemical ITCrystal_structure_miningCiencias QuímicasInglés
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After sixty years of searching, the first non-templated double helical carbon-free inorganic molecular structure has been reported. That is so neat that I thought to load the 3D coordinates here for you to interact with and then to explore the prospect of using these coordinates to add some value with e.g. some chiroptical calculations.

Crystal_structure_miningCiencias QuímicasInglés
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Chemists are as fond of records as any, although I doubt you will find many chemical ones in the Guinness world records list. Polytriangulanes chase how many cyclopropyl 3-rings can be joined via a vertex.

Reaction MechanismAddition ProductFree-energy PathwayFunctional GroupsImineCiencias QuímicasInglés
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The story so far. Imines react with a peracid to form either a nitrone (σ-nucleophile) or an oxaziridine (π-nucleophile). The balance between the two is on an experimental knife-edge, being strongly influenced by substituents on the imine.

Interesting ChemistryAminesArtemisininChemistryFunctional GroupsCiencias QuímicasInglés
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Compounds with O-O bonds often have weird properties. For example, artemisinin, which has some fascinating stereoelectronics. Here is another such, recently in the news and known as HMTD (hexamethylene triperoxide diamine). The crystal structure was reported some time ago and the article included an inspection of the computed wavefunction.

Crystal_structure_miningReaction MechanismCiencias QuímicasInglés
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Nucleophiles are species that seek to react with an electron deficient centre by donating a lone or a π-bond pair of electrons. The ambident variety has two or more such possible sources in the same molecule, an example of which might be hydroxylamine or H2NOH.

Crystal_structure_miningGeneralCarbenesChemical BondingEnergy BarrierCiencias QuímicasInglés
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To quote from Wikipedia: in chemistry, a carbene is a molecule containing a neutral carbon atom with a valence of two and two unshared valence electrons. The most ubiquitous type of carbene of recent times is the one shown below as 1, often referred to as a resonance stabilised or persistent carbene.