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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Reaction MechanismAqueous SolutionBrian ChallisCan construct Quantum-chemical modelsComputed Free Energy Barrier MatchesCiencias QuímicasInglés
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The original strategic objective of my PhD researches in 1972-74 was to explore how primary kinetic hydrogen isotope effects might be influenced by the underlying structures of the transition states involved. Earlier posts dealt with how one can construct quantum-chemical models of these transition states that fit the known properties of the reactions.

HypervalencyChemical BondChemical BondingElectronLone PairCiencias QuímicasInglés
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The post on applying VSEPR ("valence shell electron pair repulsion") theory to the geometry of ClF 3 has proved perennially popular. So here is a follow-up on another little molecue, F 3 SN. As the name implies, it is often represented with an S≡N bond. Here I take a look at the conventional analysis. This is as follows: Six valence electrons on the central S atom.

Interesting ChemistryAcidAcidsBicyclic NetworkCarboxylic AcidCiencias QuímicasInglés
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Earlier I explored models for the heteroaromatic electrophilic protiodecarboxylation of an 3-substituted indole, focusing on the role of water as the proton transfer and delivery agent. Next, came models for both water and the general base catalysed ionization of indolinones.

HistoricalReaction MechanismArenium IonBasesDiazoCiencias QuímicasInglés
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This is the third and final study deriving from my Ph.D.[cite]10.1039/P29750001822[/cite]. The first two topics dealt with the mechanism of heteroaromatic electrophilic attack using either a diazonium cation or a proton as electrophile, followed by either proton abstraction or carbon dioxide loss from the resulting Wheland intermediate.

Chemical ITCiencias QuímicasInglés
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In May 2015, the EPSRC funding council in the UK required researchers to publish the outcomes of the funded work to include an OA (open access) version of the narrative and to cite the managed research data used to support the research with a DOI (digital object identifier). I was discussing these aspects with a senior manager (research outcomes) at the EPSRC and he asked me to provide some examples from my area of chemistry;

HistoricalInteresting ChemistryReaction MechanismButylChemical ReactionsCiencias QuímicasInglés
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The BBC TV quiz series Mastermind was first broadcast in the UK in 1972, the same time I was starting to investigate the mechanism of diazocoupling to substituted indoles as part of my Ph.D. researches. The BBC program became known for the catch phrase I've started so I'll finish; here I will try to follow this precept with the project I started then.

Chemical ITCrystal_structure_miningAzobenzeneJohn McKelveySearch AzobenzeneCiencias QuímicasInglés
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This question was posted on the CCL (computational chemistry list) by John McKelvey. Here, I give an answer in the form of a search of the CSD (crystal structure database). I was not sure if the question related purely to the geometries obtained using computational methods or to comparisons with experimentally determined structures. Or indeed whether it related to azobenzene specifically or to azobenzenes in general.

Interesting ChemistryAlan DronsfieldClark LandisDurhamFranceCiencias QuímicasInglés
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You might have noticed the occasional reference here to the upcoming centenary of the publication of Gilbert N. Lewis’ famous article entitled “ The atom and the molecule ”.[cite]10.1021/ja02261a002[/cite] A symposium exploring his scientific impact and legacy will be held in London on March 23, 2016, exactly 70 years to the day since his death. A list of the speakers and their titles is shown below;

Interesting ChemistryReaction MechanismCiencias QuímicasInglés
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The layout of floor 2 of the chemistry department here contains a number of small rooms which function as tutorial areas. Each has a (non-interactive) whiteboard used by students and tutors for, inter-alia , thought-showering. It was in one such room that I found myself with three colleagues this monday afternoon. We soon all sensed something not quite right about the room;

Interesting ChemistryAnimationChemical BondCondensationDemjanov RearrangementCiencias QuímicasInglés
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In answering tutorial problems, students often need skills in deciding how much time to spend on explaining what does not happen, as well as what does. Here I explore alternatives to the mechanism outlined in the previous post to see what computation has to say about what does (or might) not happen.