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Bioinformatics, computational biology, and data science updates from the field. Occasional posts on programming.
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MIT Technology Review : Biodiversity: A missing link in combating climate change Science : At futuristic meeting, AIs took the lead in producing and reviewing all the studies . Nextflow plugin registry: registry.nextflow.io . posit::conf(2025) Quarto workshop materials . At posit::conf(2025), Posit hosted two Quarto workshops: Branded Websites, Presentations,

TILBiologíaInglés
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I used Google Docs in a recent paper I led because I had collaborators across the US, UK, Jersey, Denmark, and Mauritius, and Google Docs is infinitely better than Word online / O365 at collaborative real-time editing. I’ve used Zotero for over a decade for reference management, and I used it for this paper.

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GPU Support in Bioconductor . GPU acceleration enables faster and more scalable analysis workflows, especially for tasks like deep learning, image processing, and large-scale genomics. Bioconductor is developing better support for maintainers authoring GPU-capable packages, including adding a new Nvidia GPU build machine, new release and devel (Nvidia) GPU software builds, GPU-aware containers, and a biocViews GPU term.

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In cybersecurity, defenders have to get everything right. Cyber defense must patch every vulnerability, secure every endpoint, anticipate every exploit. Attackers, by contrast, only need to find one overlooked flaw. That imbalance, which has shaped decades of cyber conflict, has a biological analogue.

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Happy Friday, colleagues. It’s the end of the week and once again I’m going through my long list of idle browser tabs trying to catch up where I can. Lots of R and AI-related news this week. Subscribe now Strengthening nucleic acid biosecurity screening against generative protein design tools. This was a really cool paper published in Science this week from a team at Microsoft, Battelle, IDT, Twist, and others.

TILBiologíaInglés
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Over the weekend I stumbled across an interesting conference paper: Evaluating and Improving Navigability of Wikipedia . The article shows if you follow the first link in the main text of an English Wikipedia article, and then repeat the process for subsequent articles, it’ll lead you to Philosophy 97% of the time. I had my doubts, so I gave this a try with a few topics close to me. From Data science

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Happy Friday, colleagues. It’s the end of the week and once again I’m going through my long list of idle browser tabs trying to catch up where I can. Lots of R and AI-related news this week. Subscribe now Emil Hvitfeldt: Slidecrafting (slidecrafting-book.com) . This is a really wonderful one-stop shop for tips on making beautiful slides with reveal.js and Quarto.