Back on October I presented Everything you always wanted to know: plant pathway modelling in WikiPathways (doi:10.5281/zenodo.18149988) at the Knowledge Graphs for Plant and Microbiome Multiomics symposium (see this archived LinkedIn post) on 14th October 2025 (youtube recording). I had not found time yet to post about this meeting, but it was an awesome list of speakers, regrettable absense of some others, but resulting in new contacts and some

Three weeks ago, I wrote a the post Rescuing Scholia: will we make it in time?, where I sketched a future without Scholia. Scholia, started almost 10 years ago and I think it is worth keeping around longer.

This is what Struck wrote in 2018 in a contribution to the 2018 IEEE 14th International Conference on e-Science (e-Science) (doi:10.1109/eScience.2018.00016). I very much agree with this, and the notion is gaining ground in the academic community.

What started out in 2016 on Twitter became a (small) award winning decade long collaborative project. Unfortunately, the future is not clear. We are at odds if it will survice the growth of Wikidata and in particularly the SPARQL graph split. To be clear, the choice for Blazegraph initially worked great, but after it was bought by a big company, developed halted. Very unfortunate for Wikidata.

I have been running automated curation tests for many years now, at least from before 2018. Because it has been done without funding, it has not been as nicely integrated, and depends, for example, first on the RDF generation to be integrated in the GitHub Action. So, I still run them regularly (often in the morning during breakfast). Meanwhile, the curation tests help the project to monitor and maintain the quality of the pathways.

Today, exactly 20 years ago I started this blog. Two years ago I decided to upgrade my blog to one with version control. A decision I am still very excited about. It allowed me to start innovating my blog again. As part of this, and following the step Lars took ealier, I registered my blog with Rogue Scholar and I started migrating blog posts from blogger.com to my new location. I completed the years 2005, 2006, 2007, and 2008 now.

Twenty five years ago the Chemistry Development Kit (CDK) was founded. The Chemistry and Internet (ChemInt2000) had just ended (it ran from 23 to 26 September) and my friend and I had taken the Amtrak night train from Washington to South Bend. At that time there were two leading Java applets for chemistry, JChemPaint and Jmol.

This is a bit of an administrative post and historic, but keep coming back to the question, where are all the deliverable of the (past) project. Now, since many eNanoMapper project deliverables were public, we were able to release most of them on Zenodo. This post makes an overview.

I have had the Open Letter: Stop the Uncritical Adoption of AI Technologies in Academia from June 27 open for some time now.

My old blog had (has) comments via the Blogger.com platform, but I did not have anything for the new blog. A couple of options are used, like Disqus and comments via GitHub. However, these both have the downside of a vendor lock-in and the whole point of moving my blog was to break out from such lock-ins.

The Internet Journal of Chemistry (IJC, issn:1099-8292) was one of the first scientific journals to get published on the world wide web (part of the Internet), see doi:10.1080/00987913.2000.10764578. Issues were published from 1998 to 2004. But because it predates systematic archiving of webpages by libraries, a lot is lost.