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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Chemical ITCrystal_structure_miningBasesBürgi–Dunitz AngleCarbonylChimieAnglais
Publié

I have previously commented on the Bürgi–Dunitz angle, this being the preferred approach trajectory of a nucleophile towards the electrophilic carbon of a carbonyl group. Some special types of nucleophile such as hydrazines (R 2 N-NR 2 ) are supposed to have enhanced reactivity[cite]10.1016/S0040-4020(01)93101-1[/cite] due to what might be described as buttressing of adjacent lone pairs.

Interesting ChemistryDielectricEnergyEquilibrium ChemistryFluoridesChimieAnglais
Publié

The autoionization of water involves two molecules transfering a proton to give hydronium hydroxide, a process for which the free energy of reaction is well known. Here I ask what might happen with the next element along in the periodic table, F. I have been unable to find much about the autoionization of HF in the literature;

Interesting ChemistryDielectricEnergyFree EnergyHeat TransferChimieAnglais
Publié

Earlier, I constructed a possible model of hydronium hydroxide, or H 3 O + .OH^– ^One way of assessing the quality of the model is to calculate the free energy difference between it and two normal water molecules and compare the result to the measured difference. Here I apply a further test of the model using isotopes.

Chemical IT10.17616Academic PublishingDataCiteEnergy Profile DiagramsChimieAnglais
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I want to describe a recent attempt by a group of collaborators to share the research data associated with their just published article.[cite]10.1021/jacs.5b13070[/cite] I am here introducing things in a hierarchical form (i.e. not necessarily the serial order in which actions were taken). The data repository selected for the data sharing is described by (m3data) doi: 10.17616/R3K64N[cite]10.17616/R3K64N[/cite] A collaborative

Chemical ITAcademic PublishingAutomated Software AnalysisBASEChemical ContextChimieAnglais
Publié

Scientists are familiar with the term data, at least in a scientific or chemical context, but appreciating metadata (meaning "after", or "beyond") is slightly more subtle, in the sense of using it to mean data about data. The challenge lies in clarifying where the boundary between data and its metadata lies and in specifying and controlling the vocabulary used for these metadata descriptions.

GeneralInteresting ChemistryAmmoniaAnionsFree EnergyChimieAnglais
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If H 3 N + -O is viable compared with its tautomer H 2 N-OH when carrying water bridges, then why not try H 2 O + -O vs HO-OH? There are no examples to be found in crystal structures! The solvated structure of H 2 O + -O is modified directly from that of H 3 N + -O and

GeneralInteresting ChemistryAmmoniaAqueous SolutionsBasesChimieAnglais
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In the previous post I described how hydronium hydroxide or H 3 O + …HO , an intermolecular tautomer of water, has recently been observed captured inside an organic cage[cite]10.1002/chem.201406383[/cite] and how the free-standing species in water can be captured computationally with the help of solvating water bridges.

Chemical ITAcademic PublishingEmbargoOpen AccessPublishingChimieAnglais
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Publishing embargoes seem a relatively new phenomenon, probably starting in areas of science when the data produced for a scientific article was considered more valuable than the narrative of that article. However, the concept of the embargo seems to be spreading to cover other aspects of publishing, and I came across one recently which appears to take such embargoes into new and uncharted territory.

Chemical ITCrystal_structure_miningInteresting ChemistryCentroidChemical EffectChimieAnglais
Publié

A celebration of the life and work of the great chemist Paul von R. Schleyer was held this week in Erlangen, Germany. There were many fantastic talks given by some great chemists describing fascinating chemistry. Here I highlight the presentation given by Andy Streitwieser on the topic of organolithium chemistry, also a great interest of Schleyer's over the years.