Messages de Rogue Scholar

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BiologyTaxonomyInformatique et sciences de l'informationAnglais
Publié in Syntaxus baccata

In 2022, I started my Master’s in Biology, at Radboud University in the Netherlands where I had just finished my Bachelor’s degree. The Master’s programme includes two research internships of 36 EC (approx. 6 months), both of which include writing a thesis. As I had been working on a database of identification keys, I was interested in a project focused on taxonomy for my first research internship.

PythonBiologieAnglais
Publié in Paired Ends

This is part 2 of a series on uv. Other posts in this series: uv, part 1: running scripts and tools This post uv, part 3: Python in R with reticulate uv, part 4: uv with Jupyter Last year I wrote a post on creating a Python command line application with Click using a cookiecutter template, building with setuptools and publishing with twine.

Philosophie, éthique et sciences des religionsAnglais

Franz Kafka, The Zürau Aphorisms : - Arthur Miller, ‘Why I Wrote The Crucible : - Robert Musil, ‘Questions for Volume Two’ of The Man Without Qualities : - Joseph Roth: ‘Our Homeland, Our Epoch’ - Neil Postman, ‘Future Shlock’: - Hannah Arendt, ‘Franz Kafka: A Revaluation’: - Franz Kafka, The Zürau Aphorisms : -

CardiovascularNon-linearSimulationEducationalInformatique et sciences de l'informationAnglais
Publié in Bayesically Speaking

CardioCurveR With the mission to aid everyone to be able to use and test our work, we developed and published an R package with easy and out-of-the-box solutions to analyze R-R intervals with dual-logistic behaviour! Go check it here! Introduction Let’s talk about your heart.

GgplotOsm DataGéographie humaine et aménagement du territoireAnglais
Publié in Roger Beecham's blog

Introduction Our Distance Learning GIScience course is pretty established at Leeds. Students enrol part-time and complete it over a 3-year period; the final year is 100% focussed on research (dissertation). The programme draws students from a range of backgrounds and they often combine study with work in industry or government, usually GIScience or adjacent roles.

CommunityChampionsInformatique et sciences de l'informationAnglais

The NumFOCUS Diversity & Inclusion in Scientific Computing (“DISC”) Unconf took place as a hybrid event in São Paulo, Brazil, from March 14 to 16, 2025.Our community manager, Yanina Bellini Saibene, and rOpenSci Champions, Andrea Gomez Vargas and Liz Hare, participated.In this short post we report on our experience at and around the unconference.

ElixirBiohackrxivChimieAnglais
Publié in chem-bla-ics

While this was not the primary hack project during the ELIXIR BioHackathon Europe last autumn, but I really like BioHackrXiv and I got the question if I could have a look at getting the ORCID logo in generated PDF. The ORCID was already in the YAML metadata of report markdown, so it sounded easy.

Médecine et sciences de la santéAnglais
Publié in André's slide box

Acquisition of pathology whole-slide images (WSI) generates confidential patient metadata which must be handled appropriately for non-clinical purposes. Free software with multi-vendor support to remove identifying metadata from WSI is available but may be difficult to use by teams with varying information technology comfort. This post describes my design of a cross-platform file drag-and-drop interface to help resolve this challenge.

Langues et littératureAnglais
Publié in Martin Paul Eve

This week, I took some time out to read Elly Griffith’s most recent book, The Frozen People . I thought this sounded quite an interesting genre-fusing novel, welding together detective fiction and SF/time travel. Sure, it’s hardly the first to do so, but it sounded worth a read. I’d met the author a few years’ back through a mutual connection: Lesley Thompson, another British crime writer.