Last year was a big one for me, where my life changed in two major ways. One is that I started seriously studying plant pathogens, which I have found I have a deep passion for and know I want to study for the forseeable future. The other is that I graduated from university. I have made some exciting finds this year.

Exploring other cheminformatics toolkits besides the RDKit, I wanted to try EPAM Indigo Toolkit. The Indigo Toolkit is free and open-source with Apache License 2.0, so it can be used in proprietary software. I was unable to find simple examples of drawing molecules in a Python Jupyter Notebook, so here’s how to do that. This post also demonstrates how to save molecular images to a file.

I’ve always viewed FreakTakes as a small applied research shop. Discontented geniuses set out to run new science orgs or ambitious scientific philanthropies; I produce pieces that help some of them make decisions that determine parts of how to structure their orgs. I can’t do what they do — I wish I could. They do not have the time to look into the minutiae of the R&D operations from history that inspire their work.

I'm still catching up on papers from my late 2024 backlog. This week’s recap highlights autonomous microbial sensors for detecting TNT in soil, genome size estimation from long reads, STABIX for indexing and compressing GWAS summary statistics, and Clair3-RNA for deep learning-based small variant calling on long-read RNA-seq data.

Hi my friends, I’m going to be exploring sci-fi short stories more regularly on Fridays. This may be less consistent than my regular Tuesday editions, but we’ll see how it evolves. This is an experiment, motivated by positive feedback I received about The Printing Press.

Am 6. Dezember 2024 haben wir den ersten Workshop unseres von der Deutschen Forschungsgemeinschaft (DFG) geförderten Projekts Infra Wiss Blogs (Ochsner and Pampel 2024) veranstaltet.

On December 6th, 2024, we hosted the first workshop of our project Infra Wiss Blogs (Ochsner and Pampel 2024), funded by the German Research Foundation (DFG). The aim of the workshop was to bring together scholarly bloggers and experts from information infrastructure institutions, so they could exchange experiences, wishes and challenges concerning scholarly blogs.

He reunido una colección bibliográfica denominada BIOhistoria, contiene literatura académica como libros, capítulos, artículos  e incluso preprints útiles para los cursos de Filosofía e Historia de la Biología del plan de estudios de la carrera de Biología de la Facultad de Ciencias de la UNAM 1997. También resulta útil para enseñar o investigar sobre los contenidos de las materias Introducción a las teorías evolutivas e

This week we published a new, high-quality genome sequence of one of Australia’s most iconic animals, the short beaked echidna. The almost gapless genome sequence of this egg-laying mammal helps researchers to track genomic reshuffling events that gave rise to a perplexing  sex determination system. At first glance they may be mistaken for a weird-looking hedgehog.

A tarantula’s molting process is a fascinating transformation that allows for growth and regeneration, but it requires careful monitoring and ideal conditions.

Since early 2022, the Accelerated Devices lab has been involved in the OpenGPT-X project. ¹ OpenGPT-X trains large language models to enable new data-driven business solutions and specifically address European needs. As of January 2025, the project has published its main results and is set to wrap up in early 2025.